prot_H-elongata_contig47238.11832.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47238.11832.1
Unique Nameprot_H-elongata_contig47238.11832.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length327
Homology
BLAST of mRNA_H-elongata_contig47238.11832.1 vs. uniprot
Match: D7G861_ECTSI (ADP-ribosylation factor GTPase-activating protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G861_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.140e-66
Identity = 164/267 (61.42%), Postives = 184/267 (68.91%), Query Frame = 0
Query:    1 MDCWDIAQVTRMELGGNKQLRAWFARCKTENSALEMKYRTKAATLYRANLHAAAEEEIARRKAGGKEMARSAEGGRTEAGKGRIYAASKATATRDLARERENAVVAXXXXXXXXXXXXXXXXXXXRGADGSTGVVDPLLA----------SGAADSAVVTVPDVSSLTGSGEGARRCGNEE-YEVVFGAGGLGFTLMKDAVSRALVTRLAPGGAAFHLGVRTGDYLVGVSGNRLFDYDKLMVLLPRAPRPLRLLFEGAGAALAAPPP 256
            MD WD  QV RMELGGN QL+AWF +C+TENSALEMKYRTKAATLYR NL  AA+E++A   +GG + A   +G    + KGRI+AA++  A   LA+E       XXXXXXXXXXXXXX     R    S+    P+ A          +GAA         V S  G  E ARRCG EE YEVVFG GG+GFTLMKDAVSRALVTRLAPGG AF LGVRTGDYLVGV G RL DYD+LM+LLPR PRPLRLLFEGAGAALAA PP
Sbjct:   42 MDRWDAGQVRRMELGGNGQLQAWFTKCQTENSALEMKYRTKAATLYRENLRVAADEDLA---SGGGQAAGELQGA-PGSRKGRIFAAAERAAASSLAQEEAXXXXXXXXXXXXXXXXXXXRREAERAGALSSAAQVPVAARHDPPSAHAGAGAAPGGATAAATVGS--GMEEYARRCGREEEYEVVFGPGGMGFTLMKDAVSRALVTRLAPGGMAFRLGVRTGDYLVGVDGRRLHDYDQLMLLLPRTPRPLRLLFEGAGAALAASPP 302          
BLAST of mRNA_H-elongata_contig47238.11832.1 vs. uniprot
Match: A0A835ZEM7_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.450e-10
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 0
Query:    1 MDCWDIAQVTRMELGGNKQLRAWFARCKTENSALEMKYRTKAATLYRANL 50
            +D W+   +  ++LGGN QL +W  RCK +NSA+E+KYRTKAATLYR  L
Sbjct:   22 LDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 71          
BLAST of mRNA_H-elongata_contig47238.11832.1 vs. uniprot
Match: A0A7R9U3N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3N9_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.200e-7
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 0
Query:  143 AADSAVVTVPDVSS--LTGSGEGARRCGNEEYEVVFGAGGLGFTLMKDAVSRALVTRLAPGGAAFHLGVRTGDYLVGVSGNRLFDYDKLMVLLPRAPRPLRLLF------EGAGA 249
            AA +A+   P+ +S  +T  G  + R G ++    FG G +G  L +    RA V+ + P G A   G+R GD++ GV+G R+ DYD++M L+ R  RP+ + F      +GAG+
Sbjct:  134 AAAAALGDAPEAASRSVTAPGGSSGRDGVQDVWCSFGEGRMGLRLTRAKNMRATVSMITPNGNADVQGLRVGDFVCGVNGKRVGDYDEVMELVQRLKRPVSITFRRITRCDGAGS 248          
BLAST of mRNA_H-elongata_contig47238.11832.1 vs. uniprot
Match: A0A835YRV1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.490e-6
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 0
Query:  172 YEVVFGAGGLGFTLMKDAVSRALVTRLAPGGAAFHLGVRTGDYLVGVSGNRLFDYDKLMVLLPRAPRPLRLLF 244
            Y+V FG G LGFT++K      +V ++ P   A   GV  GD +V ++  R+  YD++M +LP  PRP+ + F
Sbjct:  361 YDVTFGDGRLGFTMLKSEQGLGVVCKVQPDSTAASAGVSPGDTVVAINRRRMSSYDEVMSVLPSMPRPVLVTF 433          
BLAST of mRNA_H-elongata_contig47238.11832.1 vs. uniprot
Match: A0A8J2SXS4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXS4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.080e-5
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 0
Query:  191 SRALVTRLAPGGAAFHLGVRTGDYLVGVSGNRLFDYDKLMVLLPRAPRPLRLLFEGAGAALAA 253
            S ALVT++   G A   GVR GDY+V ++G    DYD+++ L  RAPRPLRL     G   +A
Sbjct:  198 SMALVTKVVTNGPAHSAGVRVGDYVVALNGRPATDYDEVVALFARAPRPLRLTVRRFGGDASA 260          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47238.11832.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G861_ECTSI1.140e-6661.42ADP-ribosylation factor GTPase-activating protein,... [more]
A0A835ZEM7_9STRA6.450e-1056.00Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A7R9U3N9_9STRA8.200e-734.78Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A835YRV1_9STRA6.490e-638.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2SXS4_9STRA3.080e-546.03Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 179..248
e-value: 5.3E-5
score: 32.6
IPR001478PDZ domainPROSITEPS50106PDZcoord: 179..248
score: 9.773
NoneNo IPR availableGENE3D2.30.42.10coord: 165..249
e-value: 7.3E-6
score: 27.7
NoneNo IPR availablePANTHERPTHR45686:SF4ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM Hcoord: 1..120
NoneNo IPR availablePANTHERPTHR45686FAMILY NOT NAMEDcoord: 1..120
IPR038508ArfGAP domain superfamilyGENE3D3.30.40.160coord: 1..75
e-value: 7.2E-8
score: 34.3
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 172..246

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47238contigH-elongata_contig47238:1274..4123 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47238.11832.1mRNA_H-elongata_contig47238.11832.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47238 1274..4135 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47238.11832.1 ID=prot_H-elongata_contig47238.11832.1|Name=mRNA_H-elongata_contig47238.11832.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=327bp
MDCWDIAQVTRMELGGNKQLRAWFARCKTENSALEMKYRTKAATLYRANL
HAAAEEEIARRKAGGKEMARSAEGGRTEAGKGRIYAASKATATRDLARER
ENAVVAAAAVGALAKKKKDKTSRRRRGADGSTGVVDPLLASGAADSAVVT
VPDVSSLTGSGEGARRCGNEEYEVVFGAGGLGFTLMKDAVSRALVTRLAP
GGAAFHLGVRTGDYLVGVSGNRLFDYDKLMVLLPRAPRPLRLLFEGAGAA
LAAPPPGNSSSPLTSSRLPTLLATGADRASTRSSDSESSSSNSSSGNGSS
ISGSSSGSTTASSGGTGGRETDTADEE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR038508ArfGAP_dom_sf
IPR036034PDZ_sf