prot_H-elongata_contig47226.11830.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig47226.11830.1
Unique Nameprot_H-elongata_contig47226.11830.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length62
Homology
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A6H5KCV2_9PHAE (TOP1Ac domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.790e-14
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0
Query:    1 LGSDKAAAIATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 62
            LGS+KA+A+A   AS  SL  + V+KRRVRR+PPAPFITSTLQQE+SRKL LGV QTMR AQ
Sbjct:   58 LGSEKASAVA---ASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQ 116          
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.810e-14
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 0
Query:    1 LGSDKAAAIATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 62
            LGS+KA+A+A   AS  SL  + V+KRRVRR+PPAPFITSTLQQE+SRKL LGV QTMR AQ
Sbjct:  357 LGSEKASAVA---ASLSSLEVLKVDKRRVRRQPPAPFITSTLQQESSRKLRLGVDQTMRAAQ 415          
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A1G6MCS0_9PROT (DNA topoisomerase 1 n=6 Tax=Belnapia TaxID=365532 RepID=A0A1G6MCS0_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 1.680e-13
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 0
Query:    4 DKAAAI-ATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 62
            D+A+A+ A AA  A + S +SVEKRRVRR PPAPF TSTLQQEASRKLG+G  QTMRTAQ
Sbjct:  227 DEASAMRAKAAVEAGTFSVVSVEKRRVRRNPPAPFTTSTLQQEASRKLGMGAQQTMRTAQ 286          
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A6J4JKK1_9PROT (DNA topoisomerase 1 n=1 Tax=uncultured Acetobacteraceae bacterium TaxID=169975 RepID=A0A6J4JKK1_9PROT)

HSP 1 Score: 71.2 bits (173), Expect = 5.840e-13
Identity = 42/62 (67.74%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    1 LGSDKAAAIATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 62
            L ++ AA  A +A  A   S +SVEKRRVRR PPAPF TSTLQQEASRKLG G  QTMRTAQ
Sbjct:  225 LPNEAAAVRAKSAVEAGEFSVLSVEKRRVRRNPPAPFTTSTLQQEASRKLGFGAQQTMRTAQ 286          
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A4Q3STJ1_9CAUL (DNA topoisomerase (Fragment) n=1 Tax=Caulobacteraceae bacterium TaxID=1978230 RepID=A0A4Q3STJ1_9CAUL)

HSP 1 Score: 70.9 bits (172), Expect = 7.900e-13
Identity = 40/53 (75.47%), Postives = 42/53 (79.25%), Query Frame = 0
Query:   10 ATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 62
            A AA  A + S ISVEKRRV+R PPAPF TSTLQQEASRKLG G  QTMRTAQ
Sbjct:  234 AKAAVEAGTFSVISVEKRRVKRNPPAPFTTSTLQQEASRKLGFGAQQTMRTAQ 286          
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A849MVI0_9PROT (DNA topoisomerase 1 n=2 Tax=unclassified Roseicella TaxID=2730924 RepID=A0A849MVI0_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 7.980e-13
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0
Query:    4 DKAAAI-ATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 62
            D+A+A+ A AA  A + S +SVEKRRVRR PP PF TSTLQQEASRKLG+G  QTMRTAQ
Sbjct:  227 DEASALRAKAAVEAGTFSVLSVEKRRVRRNPPPPFTTSTLQQEASRKLGMGAQQTMRTAQ 286          
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A327M7B5_9PROT (DNA topoisomerase 1 n=5 Tax=Acetobacteraceae TaxID=433 RepID=A0A327M7B5_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 7.980e-13
Identity = 42/60 (70.00%), Postives = 48/60 (80.00%), Query Frame = 0
Query:    4 DKAAAI-ATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 62
            D+A+A+ A AA  A + S +SVEKRRVRR PP PF TSTLQQEASRKLG+G  QTMRTAQ
Sbjct:  227 DEASALRAKAAVEAGTFSVLSVEKRRVRRNPPPPFTTSTLQQEASRKLGMGAQQTMRTAQ 286          
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: UPI0011832222 (type I DNA topoisomerase n=1 Tax=Elioraea rosea TaxID=2492390 RepID=UPI0011832222)

HSP 1 Score: 68.6 bits (166), Expect = 5.190e-12
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    1 LGSDKAAAIATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 62
            LG +KAA  A + A A +    SVEK+RVRR PPAPF TSTLQQEA+RKLG   ++TMRTAQ
Sbjct:  225 LGDEKAAKAAVSRAEAAAYRIASVEKKRVRRNPPAPFTTSTLQQEAARKLGFSATRTMRTAQ 286          
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: UPI001080F5B5 (type I DNA topoisomerase n=1 Tax=Crenalkalicoccus roseus TaxID=1485588 RepID=UPI001080F5B5)

HSP 1 Score: 66.6 bits (161), Expect = 2.480e-11
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 0
Query:    4 DKAAAI-ATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 62
            D+AAA+ A AA  A + S  SVE++RVRR PP PF TSTLQQEASRKLGLG  QTMR AQ
Sbjct:  227 DEAAAMRAKAAVEAGAFSVASVERKRVRRNPPPPFTTSTLQQEASRKLGLGAQQTMRLAQ 286          
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Match: A0A8J2Y0H5_9PROT (DNA topoisomerase 1 n=1 Tax=Siccirubricoccus deserti TaxID=2013562 RepID=A0A8J2Y0H5_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 3.380e-11
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 0
Query:    4 DKAAAI-ATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKLGLGVSQTMRTAQ 62
            D+A+A+ A AA  A   S +SVEKRRVRR PP PF TSTLQ EASRKLG+G  Q MRTAQ
Sbjct:  227 DEASAMRAKAAVEADEFSVLSVEKRRVRRNPPPPFTTSTLQMEASRKLGMGAQQAMRTAQ 286          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig47226.11830.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCV2_9PHAE4.790e-1470.97TOP1Ac domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LDU2_ECTSI4.810e-1470.97DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus si... [more]
A0A1G6MCS0_9PROT1.680e-1371.67DNA topoisomerase 1 n=6 Tax=Belnapia TaxID=365532 ... [more]
A0A6J4JKK1_9PROT5.840e-1367.74DNA topoisomerase 1 n=1 Tax=uncultured Acetobacter... [more]
A0A4Q3STJ1_9CAUL7.900e-1375.47DNA topoisomerase (Fragment) n=1 Tax=Caulobacterac... [more]
A0A849MVI0_9PROT7.980e-1370.00DNA topoisomerase 1 n=2 Tax=unclassified Roseicell... [more]
A0A327M7B5_9PROT7.980e-1370.00DNA topoisomerase 1 n=5 Tax=Acetobacteraceae TaxID... [more]
UPI00118322225.190e-1262.90type I DNA topoisomerase n=1 Tax=Elioraea rosea Ta... [more]
UPI001080F5B52.480e-1168.33type I DNA topoisomerase n=1 Tax=Crenalkalicoccus ... [more]
A0A8J2Y0H5_9PROT3.380e-1166.67DNA topoisomerase 1 n=1 Tax=Siccirubricoccus deser... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013826DNA topoisomerase, type IA, central region, subdomain 3GENE3D1.10.290.10coord: 33..62
e-value: 2.2E-12
score: 48.7
IPR013825DNA topoisomerase, type IA, central region, subdomain 2GENE3D2.70.20.10coord: 11..32
e-value: 2.2E-12
score: 48.7
IPR013497DNA topoisomerase, type IA, centralPFAMPF01131Topoisom_baccoord: 5..62
e-value: 1.1E-11
score: 44.5
IPR000380DNA topoisomerase, type IAPANTHERPTHR42785FAMILY NOT NAMEDcoord: 5..62
NoneNo IPR availablePANTHERPTHR42785:SF3coord: 5..62
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 25..62
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availableTMHMMTMhelixcoord: 6..24
IPR023405DNA topoisomerase, type IA, core domainSUPERFAMILY56712Prokaryotic type I DNA topoisomerasecoord: 13..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig47226contigH-elongata_contig47226:4001..4186 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig47226.11830.1mRNA_H-elongata_contig47226.11830.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig47226 4001..4186 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig47226.11830.1 ID=prot_H-elongata_contig47226.11830.1|Name=mRNA_H-elongata_contig47226.11830.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
LGSDKAAAIATAAASALSLSAISVEKRRVRRKPPAPFITSTLQQEASRKL
GLGVSQTMRTAQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013826Topo_IA_cen_sub3
IPR013825Topo_IA_cen_sub2
IPR013497Topo_IA_cen
IPR000380Topo_IA
IPR023405Topo_IA_core_domain