prot_H-elongata_contig4721.11827.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4721.11827.1
Unique Nameprot_H-elongata_contig4721.11827.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length910
Homology
BLAST of mRNA_H-elongata_contig4721.11827.1 vs. uniprot
Match: D8LEQ1_ECTSI (Ciliary dynein heavy chain, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ1_ECTSI)

HSP 1 Score: 587 bits (1512), Expect = 8.960e-180
Identity = 431/1025 (42.05%), Postives = 541/1025 (52.78%), Query Frame = 0
Query:    1 MFRGIGEILWEKIMSTSGTTVRTHMTAAGVRSYGSGLEVVLFSRPQPAIGRFEHWVRDIDRQLVSAIARDVEVTITALRKHENVGSGQPLLLHIE----------------TEGDCISDGAADADGG-----GGAPTSRQNGAPTSGGR-PSLQGSLLARSAHWTTVVDAALGGPT--PRLRPSGGRGEG-----TVPTNSEV--ELRRLHVSLLRYVDGWASELREPR-IRAYESIVNAALVTQALHQRDVVDELVETL-------SQQPNKKNKKMAEVTSSSGPISFLRGDGGVRGTAKS---------------DSESDFLPFTWTCHLRHYSISRADAQ-----AKQEKNRNGDNADEGSDG-----------------ETSVTVPPPPP-LMRISLGPWNVPYGFEYAGTLERLWLTPLSERCLLHAVHSAKGCLGGLLVPASDASYDNQHHGSLSALGPSSVDRRHDALDILTAAQDISIAFGRAFRLLHSSCLTSPQAISNVIASTLTAGSVSLFAGVDALPKVSLAVLAESLRVVMMCLLAGQERVLVNGKEASSGPQVPLAIKSHQLPEFDLLLHQWRLLPCKRTSENQEG--------------PFIGIFASLSSDQSDPVLPLSLRATFRPVLVAPPSTPLLFEAMLLTSGFLGARPLVRGLVQGLHNLGHIDLPGISR-----GPSESAHAKSI----ATAGFIGEPFESLNA--------------TTIFHHITLRAVRIASGLLAPETARVLRAARRKLGLESLTTSERNTKTGALSRAVEARVLIAGVVRALLSLRVADKAKRSSESDRTKGSRQQPRYVGNNLVAEAGALGAVSAQTFETATS--SMSRGTGPEDTSTYSASIVSALEESEYLREILKPLCGLENAGRKLAQRNAKGRTNELAAEASTANRSHDVVTFRAMLKRALTVNGMSPTKDQINAAVEVWDALWSCRTPAVIVTGAAGVGKSAIFHAMPKMAEYVNAVNRKLNKSLRKMATAKDERSRSEELG 909
            MFRGIGEILW++++ST+GTTVRTHM A GVR  G+GLE V FS P PA+GR E WVRD DRQL+SAIA DVE+   +LR+++  G    L L                   +     +   ++  GG     GG     +NG  T+ GR PS+QG LLAR AHWT  +++ L      P     GG G G     +  TN     +L+ +  SLL  ++ W+ E  +P  + AY S+   AL TQAL QRDVV+EL++T+       S  P  +N         +   S   G      TA+S               D E ++ PF W CHLRHY  S  + Q     A+Q  +   DN D    G                 + + +VP     L+R+S+GPWNVPYGFEYAGTLERLWLTPLSERCLLHAVH AK                                                                   A+S+VIASTL AG V++FAGVD LPKVSLAVLAESLR VM+C+ AGQE+VLVNG+E      VPL+   H LP FD +LHQWRLLP  R      G              PF+G FA+L+    DP LPLS+RA FRPVL   P+ PL+ EAMLL+ GF+GAR LV GLV GL  L +I  P  +R     G   S H   +    ATA        S N                T+ H + ++AVR A+ LLAPETAR LRAARRKLGL SLT+SER  KT  LSRAVEARVLIAG VRALL         R+ +S +TK    +P    +            SA       +  +  +  G  +     A +VS  ++++ L+EILKPL  +   GRKLAQ+N K R  ELA E+ TA RS DV   + + KRAL +NGMSPTKDQI+AA E+W ALWSC  PAVI+TGAAG+GKS+I  AMPKMAE+V+ +NRKLNKSL+K      ++    E G
Sbjct: 1552 MFRGIGEILWKEVVSTNGTTVRTHMAATGVRCCGAGLEAVPFSSPIPAVGRLEIWVRDFDRQLMSAIAEDVEIAANSLRQYQAGGGFGHLGLRTSGLNAIPGLLPKSGIPSSSNKPANTATSERSGGDPYAVGGDGDGGKNGEQTTTGRQPSVQGQLLARGAHWTAQIESVLACTISEPLHSTDGGNGGGGAAGVSAATNKPERNKLQDVLESLLLSLNAWSGEFSQPDGLTAYNSLTITALTTQALQQRDVVEELLQTVLMPPPSPSPTPPSENGGQGRQAGETLATSAASGMAPSSPTARSAPSSINGHRDREHGIDEEENYFPFLWACHLRHYYTSPEEVQPLNGRAQQRSDLQTDNDDRSDHGAAGSGGTKNEGRGGYEDQENDSVPXXXXXLIRVSVGPWNVPYGFEYAGTLERLWLTPLSERCLLHAVHCAK-------------------------------------------------------------------AVSSVIASTLMAGGVTVFAGVDELPKVSLAVLAESLRAVMLCMHAGQEKVLVNGEE------VPLSTTPHLLPNFDPILHQWRLLPWGRQRAAGAGNCYHNXXXXXXXXXPFLGFFATLARTGPDPQLPLSVRAAFRPVLTVLPNIPLILEAMLLSRGFVGARALVLGLVGGLRELQNIPAPCHTRSDGNAGTPGSMHTGKLSFETATAAEKSSNKSSNNRCSAGGDSVTRPADPATLLHTVAVKAVRTAAELLAPETARELRAARRKLGLASLTSSERKEKTKHLSRAVEARVLIAGFVRALLFEETGGDP-RALKSQKTK----KPALSTSGNTNSXXXXXXXSAPKIVPVDNLAATPKDAGQLEIDARRAVMVSTFQKTQVLQEILKPLEDMAATGRKLAQQNLKLRATELA-ESGTAIRSRDVAQLKTLAKRALIMNGMSPTKDQIDAAAELWQALWSCSRPAVIMTGAAGIGKSSILQAMPKMAEHVDLINRKLNKSLKKQVPKAKKKQDGAEAG 2497          
BLAST of mRNA_H-elongata_contig4721.11827.1 vs. uniprot
Match: A0A835YHS2_9STRA (DHC_N2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHS2_9STRA)

HSP 1 Score: 219 bits (558), Expect = 6.510e-55
Identity = 242/839 (28.84%), Postives = 334/839 (39.81%), Query Frame = 0
Query:  131 LQGSLLARSAHWTTVVDAALGGPTPRLRP-----SGGR-----GEGTVPTNSEVELRRLHVSLLRYVDGWASELREPRIRA--YESIVNAALVTQALHQRDVVDELVETLSQQPNKKNKKMAEVTSSSGPISFLRGDGGVRGTAKSDSESDFLPFTWTCHLRHYSISRA-----DAQAKQEKNRNGDNADEGSDGETSVTVPPPPPLMRISLGPWNVPYGFEYAGTLERLWLTPLSERCLLHAVHSAK---GCLGGLLVPASDASYDNQHHGSLSALGPSSVDRRHDALDILTAAQDISIAFGRAFRLLHSSCLTSPQAISNVIASTLTAGSVSLFAGVDALPKVSLAVLAESLRVVMMCLLAGQERVLVNGKEA---SSGPQVPL--AIKSHQLPEFDLLLHQWRL-----------LPCKRTSENQEGPFIGIFASLS--SDQSDPVLPLSLRATFRPVLVAPPSTPLLFEAMLLTSGFLGARPLVRGLVQGLHNLGHIDLPGISRGPSESAHAKSIATAGFIGEPFESLNAT---TIFHHITLRAVRIASGLLAPETARVLRAARRKLGLESLTTSERNTKTGALSRAVEARVLIAGVVRALLSLRVADKAKRSSESDRTKGSRQQPRYVGNNLVAEAGALGAVSAQTFETATSSMSRGTGPEDTSTYSASIVSALEESEYLREILKPLCGLENAGRKL---------------------------AQRNAKGRTNELAA-------------------EASTANRSHDVVTFRAMLKRALTVNGMSPTKDQINAAVEVWDALWSCRTPAVIVTGAAGVGKSAIFHAMPKMAEYVN 882
            LQ SLLA  AH+T+  +AAL  P P LRP      GGR     G    P  +   LR L    L +V+GWA+   +  + A  Y  +   A  TQALH RDV+ +L   +                          D G   T+   S+    P  W CHLR+Y   RA                                    P +  S+GPW+V YG+EY GT ERLW+ PL+ER LLHA HSA+   GC G L  PA DA                          +   A D + AFGR   +L +S +TSP A++ ++   +  G V L    DAL  ++  VL ESL V+   LLAG   V++        +  PQ P   A+    +PE    L QWRL           LP   T        +   AS S   D +   LPL+LR +FRPV V  PS   L  A+L   G   A PL   L+ G+  +    L  + RG                    + L+A    +    +  R  R+ + +LA E  R L  A RKLGL +L  +E+      L  A EARVL A ++++LL +                           N +A +GA           AT        P   +     +V+ L+ +      + PL  +E  G+                             A R   G   +L A                   ++ST   + D     A+L+ AL+  G+ P  +Q+ AAV VW++LWSCR PAVI+ G  GVGKSA+ H++  MA YV+
Sbjct: 2368 LQASLLAHHAHFTSAAEAALLSPEPSLRPLGLGLGGGRPSFSSGGKPSPGGAAAALRGLLEETLEHVEGWAATCHDASLDAAQYPLLSACAHATQALHFRDVLQDLCAGI--------------------------DSGAIDTSGRSSDPRSAP-RWQCHLRYYLNERAAPAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPYLVASIGPWSVAYGWEYHGTAERLWIAPLAERALLHAAHSARRAGGCGGLLTAPAGDAQ------------------------SLCAPAWDAAAAFGRGMAVLSASSITSPHAVAALLRRVVAGGCVGLVTRADALSALARGVLVESLHVLRQALLAGHASVVLGAAAEVPLACAPQHPAVTAVTGGYMPE----LTQWRLAAAPGARPAFALPVFATLGGGSAAALSSGASSSWLGDGAAAPLPLALRVSFRPVAVVEPSVGTLLTALLHAHGCRYAVPLAAPLLGGVRAM----LRAV-RGXXXXXXXXXXXXXXXXXXRAQLLSAMDDPSSRQAVFRRCARLCASVLAREKGRALTTADRKLGLSTLPRAEKRQLAEGLLAASEARVLAAAMLKSLLEV--------------------------INGMASSGAGAXXXXXXTAAAT--------PLCVNWIGGCLVAPLQAA------MAPLQDMEKVGKMRSRLPAHMQAQXXXXXXXXXXXXXXXXDAARTTAGPGEDLLAIFDSGGSXXXXXXXXXXXXKSSTTAANKDEAVVMALLRSALSAGGLVPAPEQVRAAVAVWESLWSCRAPAVILCGPPGVGKSAVLHSLAHMARYVS 3106          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4721.11827.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEQ1_ECTSI8.960e-18042.05Ciliary dynein heavy chain, putative n=1 Tax=Ectoc... [more]
A0A835YHS2_9STRA6.510e-5528.84DHC_N2 domain-containing protein n=1 Tax=Tribonema... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 881..901
IPR026983Dynein heavy chainPANTHERPTHR10676DYNEIN HEAVY CHAIN FAMILY PROTEINcoord: 20..877

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4721contigH-elongata_contig4721:360..8035 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4721.11827.1mRNA_H-elongata_contig4721.11827.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4721 204..11237 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4721.11827.1 ID=prot_H-elongata_contig4721.11827.1|Name=mRNA_H-elongata_contig4721.11827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=910bp
MFRGIGEILWEKIMSTSGTTVRTHMTAAGVRSYGSGLEVVLFSRPQPAIG
RFEHWVRDIDRQLVSAIARDVEVTITALRKHENVGSGQPLLLHIETEGDC
ISDGAADADGGGGAPTSRQNGAPTSGGRPSLQGSLLARSAHWTTVVDAAL
GGPTPRLRPSGGRGEGTVPTNSEVELRRLHVSLLRYVDGWASELREPRIR
AYESIVNAALVTQALHQRDVVDELVETLSQQPNKKNKKMAEVTSSSGPIS
FLRGDGGVRGTAKSDSESDFLPFTWTCHLRHYSISRADAQAKQEKNRNGD
NADEGSDGETSVTVPPPPPLMRISLGPWNVPYGFEYAGTLERLWLTPLSE
RCLLHAVHSAKGCLGGLLVPASDASYDNQHHGSLSALGPSSVDRRHDALD
ILTAAQDISIAFGRAFRLLHSSCLTSPQAISNVIASTLTAGSVSLFAGVD
ALPKVSLAVLAESLRVVMMCLLAGQERVLVNGKEASSGPQVPLAIKSHQL
PEFDLLLHQWRLLPCKRTSENQEGPFIGIFASLSSDQSDPVLPLSLRATF
RPVLVAPPSTPLLFEAMLLTSGFLGARPLVRGLVQGLHNLGHIDLPGISR
GPSESAHAKSIATAGFIGEPFESLNATTIFHHITLRAVRIASGLLAPETA
RVLRAARRKLGLESLTTSERNTKTGALSRAVEARVLIAGVVRALLSLRVA
DKAKRSSESDRTKGSRQQPRYVGNNLVAEAGALGAVSAQTFETATSSMSR
GTGPEDTSTYSASIVSALEESEYLREILKPLCGLENAGRKLAQRNAKGRT
NELAAEASTANRSHDVVTFRAMLKRALTVNGMSPTKDQINAAVEVWDALW
SCRTPAVIVTGAAGVGKSAIFHAMPKMAEYVNAVNRKLNKSLRKMATAKD
ERSRSEELG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026983DHC_fam