prot_H-elongata_contig4707.11807.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4707.11807.1
Unique Nameprot_H-elongata_contig4707.11807.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length152
Homology
BLAST of mRNA_H-elongata_contig4707.11807.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 5.230e-67
Identity = 102/145 (70.34%), Postives = 121/145 (83.45%), Query Frame = 0
Query:    2 RGRTASISLQVFADADYASKATDRRSVSGGAIMCGGACVCWFSTTQKYVTLSTSEAEYVALGDAVKKLLFLRQVWRFMLPDKGLRCFPVFEDNQGAVQLSQNPVSNSNSKHIDVCHHCFRELVRQRDISVNHVSSEYQHADILPK 146
            RG  A +S++VF DADYASKA DRRSVSGG +MCGG C+ WFS TQK VTLST+EAEYV+L D +K++LFLRQVWRFMLP+ G+ C PVFEDNQGA+QL+QNP+SNSNSKHIDV HH  RELV +++IS+ HV S YQHAD L K
Sbjct:  276 RGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTK 420          
BLAST of mRNA_H-elongata_contig4707.11807.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 8.060e-67
Identity = 97/145 (66.90%), Postives = 117/145 (80.69%), Query Frame = 0
Query:    2 RGRTASISLQVFADADYASKATDRRSVSGGAIMCGGACVCWFSTTQKYVTLSTSEAEYVALGDAVKKLLFLRQVWRFMLPDKGLRCFPVFEDNQGAVQLSQNPVSNSNSKHIDVCHHCFRELVRQRDISVNHVSSEYQHADILPK 146
            RG    +S+QVF DADYASKA DRRSVSGG +MCGG CV WFS TQK VTLST+EAEYVA+ D +K++LFLRQVWRFMLPD G+ C PVFEDN   +Q++ NP++NSNSKHIDV HH  RELV +++IS+ HV+SE+QH D L K
Sbjct:    7 RGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTK 151          
BLAST of mRNA_H-elongata_contig4707.11807.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 1.970e-66
Identity = 99/145 (68.28%), Postives = 120/145 (82.76%), Query Frame = 0
Query:    2 RGRTASISLQVFADADYASKATDRRSVSGGAIMCGGACVCWFSTTQKYVTLSTSEAEYVALGDAVKKLLFLRQVWRFMLPDKGLRCFPVFEDNQGAVQLSQNPVSNSNSKHIDVCHHCFRELVRQRDISVNHVSSEYQHADILPK 146
            RG    +S+QVF DADYASKATDRRSVSGG +MCGG CV WFS TQK VTLST+EAEYVA+ D +K++LFLRQVWRFMLPD G+ C PVFEDNQGA+Q++ NP++NSNSKHIDV HH  RELV +++IS+ +V + +QHAD L K
Sbjct:  159 RGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTK 303          
BLAST of mRNA_H-elongata_contig4707.11807.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 2.940e-66
Identity = 100/145 (68.97%), Postives = 120/145 (82.76%), Query Frame = 0
Query:    2 RGRTASISLQVFADADYASKATDRRSVSGGAIMCGGACVCWFSTTQKYVTLSTSEAEYVALGDAVKKLLFLRQVWRFMLPDKGLRCFPVFEDNQGAVQLSQNPVSNSNSKHIDVCHHCFRELVRQRDISVNHVSSEYQHADILPK 146
            RG    +S+QVF DADYASKATDRRSVSGG +MCGG CV WFS TQK VTLST+EAEYVA+ D +K++LFLRQVWRFMLPD G+ C PVFEDNQGA+Q++ NP++NSNSKHIDV HH  RELV +++IS+ HV + +QHAD L K
Sbjct:  276 RGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTK 420          
BLAST of mRNA_H-elongata_contig4707.11807.1 vs. uniprot
Match: A0A6H5KBD2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD2_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 2.960e-66
Identity = 100/144 (69.44%), Postives = 119/144 (82.64%), Query Frame = 0
Query:    3 GRTASISLQVFADADYASKATDRRSVSGGAIMCGGACVCWFSTTQKYVTLSTSEAEYVALGDAVKKLLFLRQVWRFMLPDKGLRCFPVFEDNQGAVQLSQNPVSNSNSKHIDVCHHCFRELVRQRDISVNHVSSEYQHADILPK 146
            G  A +S++VFADADYASKA DRRSVSGG +MCGG C+ WFS TQK V LST+EAEY +L D +K++LFLRQVWRFMLP+ G+ C PVFEDNQGA+QL+QNP+SNSNSKHIDV HH  RELV +++IS+ HV S YQHAD L K
Sbjct:  178 GVVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVKLSTTEAEYFSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTK 321          
BLAST of mRNA_H-elongata_contig4707.11807.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 4.620e-66
Identity = 99/145 (68.28%), Postives = 119/145 (82.07%), Query Frame = 0
Query:    2 RGRTASISLQVFADADYASKATDRRSVSGGAIMCGGACVCWFSTTQKYVTLSTSEAEYVALGDAVKKLLFLRQVWRFMLPDKGLRCFPVFEDNQGAVQLSQNPVSNSNSKHIDVCHHCFRELVRQRDISVNHVSSEYQHADILPK 146
            RG    +S+QVF DADYASKATDRRSVSGG +MCGG CV WFS TQK VTLST+EAEYVA+ D +K++LFLRQVWRFMLPD  + C PVFEDNQGA+Q+  NP++NSNSKHIDV HH  RELV +++IS+ HV +++QHAD L K
Sbjct:  214 RGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTK 358          
BLAST of mRNA_H-elongata_contig4707.11807.1 vs. uniprot
Match: A0A6H5K7L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7L4_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 7.180e-66
Identity = 100/145 (68.97%), Postives = 115/145 (79.31%), Query Frame = 0
Query:    2 RGRTASISLQVFADADYASKATDRRSVSGGAIMCGGACVCWFSTTQKYVTLSTSEAEYVALGDAVKKLLFLRQVWRFMLPDKGLRCFPVFEDNQGAVQLSQNPVSNSNSKHIDVCHHCFRELVRQRDISVNHVSSEYQHADILPK 146
            RG     SLQ + DAD+ASKA DRRSVSGG + CGG  V WFS TQK VTLST+EAEYV+LGDAVK++LFLRQ+WRFMLP  G+ C P+FEDNQGA+QL+QNP+SNSNSKHIDV HH  RELV ++ IS  HV S YQ AD LPK
Sbjct:   42 RGTVEGFSLQGYTDADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVSLGDAVKEILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKAISAIHVPSPYQRADFLPK 186          
BLAST of mRNA_H-elongata_contig4707.11807.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 1.170e-65
Identity = 100/145 (68.97%), Postives = 120/145 (82.76%), Query Frame = 0
Query:    2 RGRTASISLQVFADADYASKATDRRSVSGGAIMCGGACVCWFSTTQKYVTLSTSEAEYVALGDAVKKLLFLRQVWRFMLPDKGLRCFPVFEDNQGAVQLSQNPVSNSNSKHIDVCHHCFRELVRQRDISVNHVSSEYQHADILPK 146
            RG  A +S++VFADADYASKA DRRSVSGG +MCGG C+ WFS TQK VTLST+EAEYV+L D +K++LFLRQV RF+LP+ G+ C PV EDNQGA+QL+QNP+SNS SKHIDV HH  RELVR+++IS+ HV S YQHAD L K
Sbjct:   92 RGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTK 236          
BLAST of mRNA_H-elongata_contig4707.11807.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.260e-65
Identity = 97/145 (66.90%), Postives = 118/145 (81.38%), Query Frame = 0
Query:    2 RGRTASISLQVFADADYASKATDRRSVSGGAIMCGGACVCWFSTTQKYVTLSTSEAEYVALGDAVKKLLFLRQVWRFMLPDKGLRCFPVFEDNQGAVQLSQNPVSNSNSKHIDVCHHCFRELVRQRDISVNHVSSEYQHADILPK 146
            RG    +S+QVF DADY  KA DRRSVSGG +MCGG CV WFS TQK VTLST+EAEYVA+ D +K++LFLRQVWRFMLPD G+ C PVFEDNQGA+Q++ NP++NSNSKHID  HH  R+LV +++IS+ HV+SE+QHAD L K
Sbjct:  131 RGVVTGMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTK 275          
BLAST of mRNA_H-elongata_contig4707.11807.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 1.370e-65
Identity = 101/146 (69.18%), Postives = 121/146 (82.88%), Query Frame = 0
Query:    2 RGRTASISLQVFADADYASKATDRRSVSGGAIMCGGACVCWFSTTQKYVTLSTSEAEYVALGDAVKKLLFLRQVWRFMLPDKGLRCFPVFEDNQGAVQLSQNPVSNSNSKHIDVCHHCFRELV-RQRDISVNHVSSEYQHADILPK 146
            RG  A +S++VFADADYASKA DRRSVSGG +MCGG C+ WFS TQK VTLST+EAEYV+L D +K++LFLRQVWRFMLP+ G+ C PVFEDNQGA+QL+QNP+SNSN KHIDV HH  RELV  +++IS+ HV S YQHAD L +
Sbjct:  175 RGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRELVVGRKEISIFHVESAYQHADFLTR 320          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4707.11807.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE5.230e-6770.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTT9_9PHAE8.060e-6766.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE1.970e-6668.28Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE2.940e-6668.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBD2_9PHAE2.960e-6669.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE4.620e-6668.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K7L4_9PHAE7.180e-6668.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTK6_9PHAE1.170e-6568.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8K2_9PHAE1.260e-6566.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR24_9PHAE1.370e-6569.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 4..136
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 4..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4707contigH-elongata_contig4707:6282..6766 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4707.11807.1mRNA_H-elongata_contig4707.11807.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4707 4684..6999 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4707.11807.1 ID=prot_H-elongata_contig4707.11807.1|Name=mRNA_H-elongata_contig4707.11807.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
MRGRTASISLQVFADADYASKATDRRSVSGGAIMCGGACVCWFSTTQKYV
TLSTSEAEYVALGDAVKKLLFLRQVWRFMLPDKGLRCFPVFEDNQGAVQL
SQNPVSNSNSKHIDVCHHCFRELVRQRDISVNHVSSEYQHADILPKFWRL
T*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like