prot_H-elongata_contig46980.11797.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46980.11797.1
Unique Nameprot_H-elongata_contig46980.11797.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length52
Homology
BLAST of mRNA_H-elongata_contig46980.11797.1 vs. uniprot
Match: A0A6H5L203_9PHAE (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L203_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.390e-23
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 0
Query:    1 LAQSGFLDDPAFVRFLEYLQYFTQPQYSKFITYPHSLAMLDLLINHPPFRK 51
            LAQSG+LDD AFVRFLEYLQYF +P+Y+KFITYPHSLAMLDLLIN+PPFRK
Sbjct:   27 LAQSGYLDDRAFVRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRK 77          
BLAST of mRNA_H-elongata_contig46980.11797.1 vs. uniprot
Match: D7FV80_ECTSI (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV80_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.020e-22
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0
Query:    1 LAQSGFLDDPAFVRFLEYLQYFTQPQYSKFITYPHSLAMLDLLINHPPFRK 51
            LAQ G+LDD AF+RFLEYLQYF +P+Y+KFITYPHSLAMLDLLIN+PPFRK
Sbjct:   27 LAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRK 77          
BLAST of mRNA_H-elongata_contig46980.11797.1 vs. uniprot
Match: L1J6U1_GUITC (Mediator of RNA polymerase II transcription subunit 31 (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J6U1_GUITC)

HSP 1 Score: 63.5 bits (153), Expect = 7.450e-12
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    1 LAQSGFLDDPAFVRFLEYLQYFTQPQYSKFITYPHSLAMLDLL 43
            LA  G+L DP F+R+L+YLQY+ QPQYSKF+ YPH L  LDLL
Sbjct:   27 LANQGYLRDPKFIRYLDYLQYWKQPQYSKFLVYPHCLRFLDLL 69          
BLAST of mRNA_H-elongata_contig46980.11797.1 vs. uniprot
Match: A0A7S0IJ64_MICPS (Mediator of RNA polymerase II transcription subunit 31 n=2 Tax=Micromonas TaxID=38832 RepID=A0A7S0IJ64_MICPS)

HSP 1 Score: 62.4 bits (150), Expect = 5.060e-11
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0
Query:    1 LAQSGFLDDPAFVRFLEYLQYFTQPQYSKFITYPHSLAMLDLLINHPPFRKA 52
            LA +G +DDPAF+ +LEYL+Y+ QPQY+KF+ YPH+   L+ L   P FRKA
Sbjct:   41 LASTGAMDDPAFIAYLEYLRYWEQPQYAKFVHYPHAFYFLEQL-RRPEFRKA 91          
BLAST of mRNA_H-elongata_contig46980.11797.1 vs. uniprot
Match: A0A068RXX7_9FUNG (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RXX7_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 6.100e-11
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    1 LAQSGFLDDPAFVRFLEYLQYFTQPQYSKFITYPHSLAMLDLLINHPPFRK 51
            LAQ  +  D AF+R+LEYLQY+ +P+Y++F+ YPH+L  LDLL  HP FR+
Sbjct:   21 LAQQQYFKDDAFIRYLEYLQYWKKPEYARFVVYPHALYFLDLL-QHPKFRE 70          
BLAST of mRNA_H-elongata_contig46980.11797.1 vs. uniprot
Match: A0A6U6IBL1_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IBL1_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.170e-10
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    1 LAQSGFLDDPAFVRFLEYLQYFTQPQYSKFITYPHSLAMLDLLINHPPFRK 51
            LA SG L D +F+ FLEYL+Y+++P+Y++FITYPH L  LDLL  +  FR+
Sbjct:   53 LATSGLLSDSSFLSFLEYLRYWSRPEYARFITYPHCLYFLDLLTTNETFRR 103          
BLAST of mRNA_H-elongata_contig46980.11797.1 vs. uniprot
Match: A0A068RZM8_9FUNG (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Lichtheimia corymbifera JMRC:FSU:9682 TaxID=1263082 RepID=A0A068RZM8_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 1.280e-10
Identity = 28/51 (54.90%), Postives = 39/51 (76.47%), Query Frame = 0
Query:    1 LAQSGFLDDPAFVRFLEYLQYFTQPQYSKFITYPHSLAMLDLLINHPPFRK 51
            LAQ  +  D AF+R+LEYLQY+ +P+Y++F+ YPH+L  LDLL  HP FR+
Sbjct:   62 LAQQQYFKDDAFIRYLEYLQYWKKPEYARFVVYPHALYFLDLL-QHPKFRE 111          
BLAST of mRNA_H-elongata_contig46980.11797.1 vs. uniprot
Match: A0A1X2HHW3_SYNRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HHW3_SYNRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.620e-10
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 0
Query:    1 LAQSGFLDDPAFVRFLEYLQYFTQPQYSKFITYPHSLAMLDLLINHPPFRK 51
            LAQ  +  D +F+R+LEYLQY+ QP+Y+KFI YPH+L  LDLL  H  FR+
Sbjct:   34 LAQQQYFKDESFIRYLEYLQYWKQPEYAKFIVYPHALYFLDLL-QHEQFRE 83          
BLAST of mRNA_H-elongata_contig46980.11797.1 vs. uniprot
Match: S2JPN7_MUCC1 (Mediator of RNA polymerase II transcription subunit 31 n=5 Tax=Mucoraceae TaxID=34489 RepID=S2JPN7_MUCC1)

HSP 1 Score: 59.7 bits (143), Expect = 4.720e-10
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:    1 LAQSGFLDDPAFVRFLEYLQYFTQPQYSKFITYPHSLAMLDLLINHPPFR 50
            LAQ  +  D AF+ +LEYLQY+ QP+Y+KF+ YPH+L  LDLL  H  FR
Sbjct:   30 LAQQQYFKDEAFINYLEYLQYWKQPEYAKFVVYPHALYFLDLL-QHAQFR 78          
BLAST of mRNA_H-elongata_contig46980.11797.1 vs. uniprot
Match: A0A4P9WVG9_9FUNG (Mediator of RNA polymerase II transcription subunit 31 (Fragment) n=1 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9WVG9_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 8.190e-10
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 0
Query:    1 LAQSGFLDDPAFVRFLEYLQYFTQPQYSKFITYPHSLAMLDLL 43
            LAQ+G+ DD  F+ +L YLQY+ QPQY+++ITYP+ L +LDLL
Sbjct:   21 LAQNGYFDDAEFLNYLRYLQYWCQPQYARYITYPYCLEVLDLL 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46980.11797.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L203_9PHAE2.390e-2386.27Mediator of RNA polymerase II transcription subuni... [more]
D7FV80_ECTSI1.020e-2282.35Mediator of RNA polymerase II transcription subuni... [more]
L1J6U1_GUITC7.450e-1265.12Mediator of RNA polymerase II transcription subuni... [more]
A0A7S0IJ64_MICPS5.060e-1155.77Mediator of RNA polymerase II transcription subuni... [more]
A0A068RXX7_9FUNG6.100e-1154.90Mediator of RNA polymerase II transcription subuni... [more]
A0A6U6IBL1_9STRA1.170e-1054.90Mediator of RNA polymerase II transcription subuni... [more]
A0A068RZM8_9FUNG1.280e-1054.90Mediator of RNA polymerase II transcription subuni... [more]
A0A1X2HHW3_SYNRA1.620e-1056.86Mediator of RNA polymerase II transcription subuni... [more]
S2JPN7_MUCC14.720e-1056.00Mediator of RNA polymerase II transcription subuni... [more]
A0A4P9WVG9_9FUNG8.190e-1058.14Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038089Mediator complex, subunit Med31 domain superfamilyGENE3D1.10.10.1340coord: 1..51
e-value: 3.1E-16
score: 60.7
IPR008831Mediator complex, subunit Med31PFAMPF05669Med31coord: 1..51
e-value: 7.2E-17
score: 61.2
IPR008831Mediator complex, subunit Med31PANTHERPTHR13186MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT SOH1coord: 1..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46980contigH-elongata_contig46980:1537..2283 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46980.11797.1mRNA_H-elongata_contig46980.11797.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46980 1537..2283 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46980.11797.1 ID=prot_H-elongata_contig46980.11797.1|Name=mRNA_H-elongata_contig46980.11797.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
LAQSGFLDDPAFVRFLEYLQYFTQPQYSKFITYPHSLAMLDLLINHPPFR
KA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038089Med31_sf
IPR008831Mediator_Med31