prot_H-elongata_contig46956.11794.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46956.11794.1
Unique Nameprot_H-elongata_contig46956.11794.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length98
Homology
[Close]
BLAST of mRNA_H-elongata_contig46956.11794.1 vs. uniprot
Match: A0A6H5JIV0_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIV0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.140e-11
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0 
Query:   20 RRKSFEEESRREKSRNVKIALGSFLSAVGLFFLQHSVISPVQANPV 65
            RR + EE +RREK+RN KIA GSFLSAVGLFF QH+ I+P QANPV
Sbjct:   97 RRGALEEFNRREKARNTKIAFGSFLSAVGLFFCQHAAIAPAQANPV 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46956.11794.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIV0_9PHAE8.140e-1171.74Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 58..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..57
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..37
NoneNo IPR availableTMHMMTMhelixcoord: 38..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46956contigH-elongata_contig46956:348..3147 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46956.11794.1mRNA_H-elongata_contig46956.11794.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46956 209..3198 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46956.11794.1 ID=prot_H-elongata_contig46956.11794.1|Name=mRNA_H-elongata_contig46956.11794.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MDQEIRDQEGMAAGDIGGQRRKSFEEESRREKSRNVKIALGSFLSAVGLF
FLQHSVISPVQANPVPVAASHGVNLDPYRVRPYQRTANGCRFLCRLV*
back to top