prot_H-elongata_contig46605.11758.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46605.11758.1
Unique Nameprot_H-elongata_contig46605.11758.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length328
Homology
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BLAST of mRNA_H-elongata_contig46605.11758.1 vs. uniprot
Match: A0A6A4I5N8_9AGAR (Uncharacterized protein (Fragment) n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4I5N8_9AGAR)

HSP 1 Score: 54.7 bits (130), Expect = 3.670e-5
Identity = 41/142 (28.87%), Postives = 63/142 (44.37%), Query Frame = 0 
Query:  197 EYQSLSSENASDARLQCRVCLIPGI-----KSSDMRHHVASHILHDQAADEPGDLSAADVCGFCGERNR-CHTSLQKGFSRRTNIVV-STCCYAPRGTGSSAWMENQVNIKLGTAKKSSQRCPSTNVPMECAIC---AKVVW 328
            +Y+S S E  ++A   C     P +     +   +  HV +HI+HD   +      + + CG C +    C   L+K   R++ + V +TC   P          N V    GTA KS+Q  P +NVP+ C +C   A  VW
Sbjct:    5 KYESASRE--TNAGQHCCPQCTPAVPLDMEQGQQVIEHVGAHIVHDTLVNR-----STEPCGLCLQATPLCRIYLKKAQGRKSGVKVDATCSKCP----------NLVKFFYGTAMKSTQSSPCSNVPLTCELCGIGAAAVW 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46605.11758.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6A4I5N8_9AGAR3.670e-528.87Uncharacterized protein (Fragment) n=1 Tax=Gymnopu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 40..328
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availableTMHMMTMhelixcoord: 20..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46605contigH-elongata_contig46605:474..1726 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46605.11758.1mRNA_H-elongata_contig46605.11758.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46605 474..2195 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46605.11758.1 ID=prot_H-elongata_contig46605.11758.1|Name=mRNA_H-elongata_contig46605.11758.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=328bp
MRGGHDELGDLTSMEVGDPFVSMAFLATGMLTMCVFALAKPVDTTKGDSQ
DLRACLAHLTPVDLGDRGVDKVRQEQKSARSGDGSVQNPSWQGVHAGNGT
AGEVEVLPVVGDGKDEPAWAWDEGRVFSGELQIPASLILPVNPDLDEQLQ
TTIFRRSDLDTLLEQLELKMYAQSSWRAKILTLASTAPDVPYHPSMEYQS
LSSENASDARLQCRVCLIPGIKSSDMRHHVASHILHDQAADEPGDLSAAD
VCGFCGERNRCHTSLQKGFSRRTNIVVSTCCYAPRGTGSSAWMENQVNIK
LGTAKKSSQRCPSTNVPMECAICAKVVW
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