prot_H-elongata_contig4657.11755.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4657.11755.1
Unique Nameprot_H-elongata_contig4657.11755.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length734
Homology
BLAST of mRNA_H-elongata_contig4657.11755.1 vs. uniprot
Match: D8LQ17_ECTSI (Katanin p80 WD40 repeat-containing subunit B1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ17_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 2.280e-92
Identity = 306/807 (37.92%), Postives = 368/807 (45.60%), Query Frame = 0
Query:    1 RAITFDTEGQSVFCASPSGLRRWSWDNDTATARLETMGDVAWGRVCAGALHYNADGRQILAASCAGARAVSAWAVDFDEESDNDDDVELIGPQRHQXXXXXXXXXXXXXXGERDMYGGVQPSRSPRTPPAAADAAAGPRSLSPRVLGSKSIAPAAL---VAVGGSRASDIYSDHRATACPDNSFGGQMRKNSSRPAEEGKWRNQSPGSPASAFRILERHLASPVAIAEDKSPLSSPAGSGSDGSPVPRYSRATVATAKASAKESVNDVTTVVSSSTGR---NRSIGTSVSDTLMLASCKSRGDTGGSTCNGADGQYRAAAWQDLQVKTEAEPVPGKRGGDTTGAPVDD--------VGASRGHDAKRRPERNFEARENKGRGGRDAGVGALVGDR-AEEKWLDAARAGR-RYRNARCIDVSEEKRSVMEAEDEKESETASNSRIMNDVWLEDGGKAGGGDSPPLLGSAESSPRL----------PRVAPSSSH--PPRGE------------NGVSGEVETVDAARS--------------------------------------ASAPASVDTITPSAVTSSGSLRNTDSRVNGDGGDELGRTRPRTATKRWDRPGPPSEDEVIANILLSRGALKSKLSERLDHLRHLRITWTEGDVSGSISRLKWLESLVTSVDASPRTVVADFLSVASLDGPRVTFEHCLELMPLLEDMWKLDTEKSVAAATRCFESVLRRFGGFVRDTLAAPMSAGCVDLARDGRVERCREAHRAFIRGYRHLDMVETEFYESSRIAAVAERLRPLFESYFMS 729
            RAITFD +GQ ++CASPSGLRRWSWDNDTA+ARLE MGDV WG+V AGALHYNADG+Q    S    R  +  A    + S + D    +  +        XXXX XXXX    M       R     P AA+     RS SP  LG  +  P      V VGG               P ++ GG+++   +  AE            A+          +  A+A       S AGS             +V T       S++D   +    T     +R+ G              + D G     G D     AA   +    +   + G+R          D         GA  G +     E+  E R   G  G D   G   G R A+EK       G  R  NA        + +V      K+S   +  RI  +V        GG DSPPLLGS E +P            P   PSSS   P R +            + V   + T D +                                         S P  +     S     G              DELG TRPRTAT+RWDRPGPP +DEVIA  LLSR    S LS RL HLR LR  W +GDVSG+IS+L  LE   T  D SPRTVVADFL V  LDG RVT +HCLELMPLLE +WKLD    VAAATRC ES++RRFGGF+RDTLAAP++AG VDLAR+ R+ RCREAHRAFIRGY HL+  E EFYE  RIAAVAERLRPLFESYFMS
Sbjct:  240 RAITFDPDGQKMYCASPSGLRRWSWDNDTASARLEAMGDVPWGKVGAGALHYNADGQQQSRPS----RGNTFPASRDGQRSHSRDSKPTMEKEASGGDDGSXXXXCXXXXXXAGMPAFQVLGRQVVLLPTAAEEKV--RSSSP--LGGPAATPXXXXSGVTVGG---------------PSSAVGGRLQNRHAARAE---------AVAATVXXXXXXXXXTDDAVA-------SVAGS---------IRHRSVGT-------SISDTLVIADGGTADQADDRAGGREHRPAAWSEPAPGKDDGGN---YGRDSGRGVAAALGVVAAGDRHRLGGERRXXXXXXXXXDECKWHKRVAGAFAGVEGTADDEKGVERR---GDSGGDGSGGKNRGKRTADEKEARREEDGTDRAANAGVSSGVTPRFTVNPWP--KDSRVEAGGRIRTEV------PGGGQDSPPLLGSPEPAPAAASNPARSKNEPPSFPSSSRRSPDRPQPREKTHAVVTRSSAVGFPITTADGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSEPEGL-----SVADIFGXXXXXXXXXXXXXXDELGMTRPRTATRRWDRPGPPGDDEVIAKTLLSRATATSTLSNRLTHLRMLRYGWADGDVSGTISKLTRLERSATVADDSPRTVVADFLWVVPLDGTRVTLDHCLELMPLLEGLWKLDAGSCVAAATRCLESIVRRFGGFIRDTLAAPVAAGRVDLAREDRIARCREAHRAFIRGYHHLERSEGEFYEDRRIAAVAERLRPLFESYFMS 972          
BLAST of mRNA_H-elongata_contig4657.11755.1 vs. uniprot
Match: A0A6H5K3J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J5_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 1.640e-72
Identity = 290/821 (35.32%), Postives = 360/821 (43.85%), Query Frame = 0
Query:    1 RAITFDTEGQSVFCASPSGLRRWSWDNDTATARLETMGDVAWGRVCAGALHYNADGRQ---ILAASCAGARAVSAWAVDFDEESDNDDDVELIGPQRHQXXXXXXXXXXXXXXGERDMYGGVQPSRSPR--TPPAAADAAAGPRSLSPRVLGSKSIAPAALVAVGGSRASDIYSDHRATACPDNSFGGQMRKNSSRPAEEGKWRNQSPGSPASAFRILERHLASPVAIAEDKSPLSSP-----------------AGSGSDGSPVPRYSRATVATAKASAKES---------VNDVTTVVSSSTGRNRSIGTSVSDTLMLASCKSRGDTGGSTCNGADG-QYRAAAWQDLQVKTEAEPVPGKRGGDTTGAPVDDVG----ASRGHDAKRRPERNFEARENKGRGGRDAG---------VGALVGDRAEEKWLDAARAGRRYRNARCIDVSEEKRSVMEAEDEKES-------ETASN--------SRIMNDVWLED-----------GGKAGGGDSPPLLGSAESSPRL----------PRVAPSSSHPPRGENGVSGEVETVDAARSASAPASVDTIT----------------------------------------PSAVTSSGSLRNTDSRVNGDGGDELGRTRPRTATKRWDRPGPPSEDEVIANILLSRGALKSKLSERLDHLRHLRITWTEGDVSGSISRLKWLESLVTSVDASPRTVVADFLSVASLDGPRVTFEHCLELMPLLEDMWKLD----------TEKSVAAATRCFESVLRRFGGFVRDTLAAPMSAGCVDLARDGRVERCREAHR 690
            RAITFD +GQ ++CASPSGLRRWSWDN  A+A+LE MGDV WG+V AGALHYNADG+Q   + AAS + A   +         +++  D  L    R                G+ D    V  SR  R  T PA+ D   G RS S                    R S    +  A+   D S                            AF++L R +      AE+K+  SSP                  G  S G    R      A A+A A             +D    V+ S  R+RS+GTS+SDTL++A     G T     + A G ++R AAW        +EP PGK   D  G  V D G    A+ G  A    +R+  + E +  GG D G          GA  G    E   D  + G   R+    D S  K       DEKE+       + A+N        SR+  D W +D           G   GG DSPPLLGS E +P            P   PSSS         S + +TV   RS++    + T                                          P  ++ +    +      G G DELG TRPRTAT+RWDRPGPP EDEVIA  LLSR    S LS R          W +GDVSG+IS+L  LE   T  D SPRTVVADFL V  LDG RVT +HCLELMPLLE +WK+           T + VAAATRC ES++RRFGGF+RDTL AP++AG VDLAR+ RV RCREAHR
Sbjct:  219 RAITFDPDGQKMYCASPSGLRRWSWDNHIASAQLEAMGDVPWGKVGAGALHYNADGQQGRNLGAASESSAPLDTPARGATTTATESPSDPSLSTTDREY--------------GDADAK--VPESRPSRGNTFPASRD---GQRSHS--------------------RDSKPTMEKEASGGDDGSXXXXXXX-------------XXXXXXMPAFQVLGRQVVLLPTAAEEKAKPSSPXXXXXXXXXXXXXXXXVGGPASAGGG--RIQNRHAARAEAVAXXXXXXXXXXXXTDDAVASVAGSI-RHRSVGTSISDTLVIAD----GCTADQADDRAGGREHRPAAW--------SEPAPGK---DDGGNYVRDCGRGVAAALGVVAA--GDRHRLSGERRATGGADDGDECKWHKRVAGAFAG---VEGTADDEK-GMERRDDSGGDGSGGKTRGKGNADEKEARREGDGTDRAANVGVPSGVTSRMTVDPWPKDSWVEAEGRNRAGVPGGGEDSPPLLGSPEPAPAAASNPARSMNEPPSFPSSSRRSPDRPQPSDKTDTV-VTRSSAVGFPITTADGSISGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPEPEGLSVADIFGDGGGDCGGGGSDELGMTRPRTATRRWDRPGPPGEDEVIAKTLLSRATATSTLSNRYG--------WADGDVSGTISKLTRLERSATVADDSPRTVVADFLWVVPLDGTRVTLDHCLELMPLLEGLWKVAETPACLPSFLTTRCVAAATRCLESIVRRFGGFIRDTLTAPVAAGRVDLAREDRVARCREAHR 954          
BLAST of mRNA_H-elongata_contig4657.11755.1 vs. uniprot
Match: UPI001B7E8E9A (LOW QUALITY PROTEIN: katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 n=1 Tax=Juglans microcarpa x Juglans regia TaxID=2249226 RepID=UPI001B7E8E9A)

HSP 1 Score: 60.8 bits (146), Expect = 8.480e-6
Identity = 39/144 (27.08%), Postives = 72/144 (50.00%), Query Frame = 0
Query:  542 SEDEVIANILLSRGALKSKLSERLDHLRHLRITWTEGDVSGSISRLKWLESLVTSVDASPRTVVADFLSVASLDGPRVTFEHCLELMPLLEDMWKLDTEKSVAAATRCFESVLRRFGGFVRDTLAAPMSAGCVDLARDGRVERC 685
            S+++ IA ++   G   S +  R   L+ +   W + DV   IS +  +         +   VVAD +S+ +++   VT + C  L+PLL  + + + ++ ++ +      V+R FG  +  TL+A  S G VD+  + R+ERC
Sbjct:  653 SDEDAIAGVMEQHGQFVSSMQSRSAKLQIVYRYWEKSDVKTVISAMAKM---------ADNAVVADVISIMTVNIDVVTLDICTCLLPLLTGLLESEIDRHLSISLDLLLKVVRIFGSVIYSTLSASSSVG-VDIEAEQRLERC 786          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4657.11755.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQ17_ECTSI2.280e-9237.92Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
A0A6H5K3J5_9PHAE1.640e-7235.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001B7E8E9A8.480e-627.08LOW QUALITY PROTEIN: katanin p80 WD40 repeat-conta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028021Katanin p80 subunit, C-terminalPFAMPF13925Katanin_con80coord: 559..692
e-value: 1.4E-14
score: 54.4
NoneNo IPR availablePANTHERPTHR19845KATANIN P80 SUBUNITcoord: 1..692
NoneNo IPR availablePANTHERPTHR19845:SF0KATANIN P80 WD40 REPEAT-CONTAINING SUBUNIT B1coord: 1..692

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4657contigH-elongata_contig4657:6402..11701 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4657.11755.1mRNA_H-elongata_contig4657.11755.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4657 6402..11701 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4657.11755.1 ID=prot_H-elongata_contig4657.11755.1|Name=mRNA_H-elongata_contig4657.11755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=734bp
RAITFDTEGQSVFCASPSGLRRWSWDNDTATARLETMGDVAWGRVCAGAL
HYNADGRQILAASCAGARAVSAWAVDFDEESDNDDDVELIGPQRHQRQQQ
RRSRRDHDHDGERDMYGGVQPSRSPRTPPAAADAAAGPRSLSPRVLGSKS
IAPAALVAVGGSRASDIYSDHRATACPDNSFGGQMRKNSSRPAEEGKWRN
QSPGSPASAFRILERHLASPVAIAEDKSPLSSPAGSGSDGSPVPRYSRAT
VATAKASAKESVNDVTTVVSSSTGRNRSIGTSVSDTLMLASCKSRGDTGG
STCNGADGQYRAAAWQDLQVKTEAEPVPGKRGGDTTGAPVDDVGASRGHD
AKRRPERNFEARENKGRGGRDAGVGALVGDRAEEKWLDAARAGRRYRNAR
CIDVSEEKRSVMEAEDEKESETASNSRIMNDVWLEDGGKAGGGDSPPLLG
SAESSPRLPRVAPSSSHPPRGENGVSGEVETVDAARSASAPASVDTITPS
AVTSSGSLRNTDSRVNGDGGDELGRTRPRTATKRWDRPGPPSEDEVIANI
LLSRGALKSKLSERLDHLRHLRITWTEGDVSGSISRLKWLESLVTSVDAS
PRTVVADFLSVASLDGPRVTFEHCLELMPLLEDMWKLDTEKSVAAATRCF
ESVLRRFGGFVRDTLAAPMSAGCVDLARDGRVERCREAHRAFIRGYRHLD
MVETEFYESSRIAAVAERLRPLFESYFMSFGSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028021Katanin_C-terminal