prot_H-elongata_contig46318.11722.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46318.11722.1
Unique Nameprot_H-elongata_contig46318.11722.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length359
Homology
BLAST of mRNA_H-elongata_contig46318.11722.1 vs. uniprot
Match: D7FQX1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX1_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 4.720e-73
Identity = 153/296 (51.69%), Postives = 172/296 (58.11%), Query Frame = 0
Query:   42 CGKKTVRRSLPAGNGRVFQALPGESYFRATPGEGSAAQGIASTSA----------------------------------------------WPRPSVGDSSPSDRCSLAIVIRPAGVDTRGDWARWRHRPTHRVTRQVLLVQFKEREDASLEAQLPQPPSAEVMRHLVAISEGGQGGVESIYSFSEVFGASEETEATRQTGPSATASAVDSAHATAGFGSSSTLNASDESARHGADGGGRGERLPEECVICLTEPKSTLLLPCRHLCVCSECFRHVDKCPVCRAAFDNYVVLEEPS 291
            CGK+TV R+L AG GRVF  LPGESYFR     G    G  +TSA                                              WPR  VGDS  + RCSLAIVIRPA     GDWA WRHRPTHRVTRQVLLVQ  ER   +  A   Q PSA  +RHLVA+S+GG G  ESIYSF+EVFGAS+E     + G    AS + S  ATA  G+             GA G G GE +PEECVICLT+PK+TLLLPCRHLCVC+ECFRHVDKCPVCR+AFDNY+VL  PS
Sbjct:  462 CGKRTVPRALSAGGGRVFTTLPGESYFRGRQQSGEWNAGATATSAAGAAKTGXXXXXXVDGRATSAVSAFVXXXXXXXXXXERRPAAGGRDWPR--VGDSVRAGRCSLAIVIRPAAGGETGDWAGWRHRPTHRVTRQVLLVQLTERSAGADGAPSQQAPSARCLRHLVAMSKGGDGDPESIYSFAEVFGASDEAGGAARPG---LASNIGSIQATASRGA-------------GAGGLGAGEEVPEECVICLTDPKNTLLLPCRHLCVCTECFRHVDKCPVCRSAFDNYIVLSAPS 739          
BLAST of mRNA_H-elongata_contig46318.11722.1 vs. uniprot
Match: A0A6H5K7X0_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X0_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 2.170e-70
Identity = 154/318 (48.43%), Postives = 175/318 (55.03%), Query Frame = 0
Query:   42 CGKKTVRRSLPAGNGRVFQALPGESYFRATPGEGSAAQGIASTSA---------------------------------------------WPRPSVGDSSPSDRCSLAIVIRPAGVDTRGDWARWRHRPTHRVTRQVLLVQFKEREDASLEAQLPQPPSAEVMRHLVAISEGGQGGVESIYSFSEVFGASEETEATRQTGPSATASAVDSAHATAGFGSSSTL-----------------------NASDESARHGADGGGRGERLPEECVICLTEPKSTLLLPCRHLCVCSECFRHVDKCPVCRAAFDNYVVLEEPS 291
            CGK+TV R+L AG GRVF  LPGESYFR     G    G  +TSA                                             WPR  VGD   + RCSLAIVIRPA  +  GDW  WRHRPTHRVTRQ+ LVQ  ER      A   Q PSA  +RHLVA+S+GG G  ESIYSF+EVFGAS+E     + G    AS + S  AT   GSSST+                       N +  S   GA G G GE +PEECVICLT+PK+TLLLPCRHLCVC+ECFRHVDKCPVCR+AFDNY+VL  PS
Sbjct:  425 CGKRTVPRALSAGRGRVFTTLPGESYFRGRQQGGEWNAGATATSAAGAAKVGGGRGGGVDVRXXXXXXXXXXXXXXXXGAGERPAAGGRDWPR--VGDPVRAGRCSLAIVIRPAAGEETGDWVGWRHRPTHRVTRQIWLVQLTERSAGVDGAPSQQAPSARCLRHLVAMSKGGDGDPESIYSFAEVFGASDEAGGAARPG---LASNIGSIQATVDGGSSSTVXXXXXXXXXXXXXXXXXXXXXXSNPAQASRGAGAGGLGAGEEVPEECVICLTDPKNTLLLPCRHLCVCTECFRHVDKCPVCRSAFDNYIVLSAPS 737          
BLAST of mRNA_H-elongata_contig46318.11722.1 vs. uniprot
Match: A0A7S2AX55_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AX55_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.480e-18
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 0
Query:  241 EECVICLTEPKSTLLLPCRHLCVCSECFRHVDKCPVCRAAFDNYVVLEE 289
            EEC ICLTEPK T LLPCRHLCVCS CF+ +DKCPVCRA F+ Y+V  +
Sbjct:   69 EECTICLTEPKDTTLLPCRHLCVCSTCFKQIDKCPVCRAPFETYIVFND 117          
BLAST of mRNA_H-elongata_contig46318.11722.1 vs. uniprot
Match: A0A835Z5X0_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5X0_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 7.930e-18
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 0
Query:  242 ECVICLTEPKSTLLLPCRHLCVCSECFRHVDKCPVCRAAFDNYVVLEEPSP 292
            +CVICLTE K+ +LLPCRHLCVC  CFRH+DKCPVCR+AFDNY+ ++ P+P
Sbjct:   17 DCVICLTEEKAFMLLPCRHLCVCKACFRHIDKCPVCRSAFDNYLQVD-PAP 66          
BLAST of mRNA_H-elongata_contig46318.11722.1 vs. uniprot
Match: A0A7S1CHK6_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHK6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.790e-16
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 0
Query:  242 ECVICLTEPKSTLLLPCRHLCVCSECFRHVDKCPVCRAAFDNYVVLEEPS 291
            +C++C+TE KS +LLPCRHLCVC ECF H+DKCPVCR  +D Y+V + P+
Sbjct:  116 DCLVCMTEKKSVVLLPCRHLCVCQECFTHIDKCPVCRTVYDGYMVFQWPA 165          
BLAST of mRNA_H-elongata_contig46318.11722.1 vs. uniprot
Match: A0A7S2SVW1_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVW1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.970e-16
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0
Query:  241 EECVICLTEPKSTLLLPCRHLCVCSECFRHVDKCPVCRAAFDNYVVLEE 289
            ++CV+CLTE K T+LLPCRHLCVC  CFR +DKCPVCR  F+ Y+V  +
Sbjct:    4 QKCVVCLTEAKDTILLPCRHLCVCRHCFRQIDKCPVCRTPFETYMVFTD 52          
BLAST of mRNA_H-elongata_contig46318.11722.1 vs. uniprot
Match: A0A7S2XYA7_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYA7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.950e-15
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 0
Query:  233 GGRGERLPEECVICLTEPKSTLLLPCRHLCVCSECFRHVDKCPVCRAAFDNYVVLEE 289
            GG  E   +EC +CLT+PK   LLPCRH+CVC ECFRH+ +CPVCR+ F++Y+  ++
Sbjct:  170 GGEDEGQADECTVCLTDPKDVALLPCRHVCVCRECFRHISRCPVCRSPFEDYLRFDQ 226          
BLAST of mRNA_H-elongata_contig46318.11722.1 vs. uniprot
Match: A0A7S2SWX2_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SWX2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.080e-14
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0
Query:  241 EECVICLTEPKSTLLLPCRHLCVCSECFRHVDKCPVCRAAFDNYVVLEE 289
            EECV+CLTE K T+LLPCRHLCVC  CFR +DKCPVCR  F+ Y+V  +
Sbjct:  471 EECVVCLTEAKDTILLPCRHLCVCRHCFRQIDKCPVCRTPFETYMVFTD 519          
BLAST of mRNA_H-elongata_contig46318.11722.1 vs. uniprot
Match: A0A8J5WZS5_DIALT (RING-type E3 ubiquitin transferase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5WZS5_DIALT)

HSP 1 Score: 81.6 bits (200), Expect = 3.440e-13
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 0
Query:  230 ADGGGRGERLPEECVICLTEPKSTLLLPCRHLCVCSECFRHVDKCPVCRAAFDNYVVL 287
            A+G G  E + E CVICL+EPKS LLLPCRHLC C +CF  VDKCPVCR  FD++V +
Sbjct:  689 AEGTGGHEGVGE-CVICLSEPKSVLLLPCRHLCCCHDCFTQVDKCPVCRTEFDSFVSV 745          
BLAST of mRNA_H-elongata_contig46318.11722.1 vs. uniprot
Match: A0A7S3C5X0_9EUKA (RING-type E3 ubiquitin transferase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C5X0_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 3.570e-12
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 0
Query:  242 ECVICLTEPKSTLLLPCRHLCVCSECF-RHVDKCPVCRAAFDNYVVLE----EPSPREA 295
            +CVICLTEP+ T+LLPCRHLC+C  CF R  D+CPVCRA F +Y+       EPSP  A
Sbjct:   86 DCVICLTEPRDTILLPCRHLCLCQACFERSDDRCPVCRAPFQSYLRFTTPDTEPSPDAA 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46318.11722.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQX1_ECTSI4.720e-7351.69RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5K7X0_9PHAE2.170e-7048.43RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A7S2AX55_9STRA4.480e-1871.43RING-type E3 ubiquitin transferase n=1 Tax=Dictyoc... [more]
A0A835Z5X0_9STRA7.930e-1870.59RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
A0A7S1CHK6_9STRA4.790e-1662.00RING-type E3 ubiquitin transferase n=1 Tax=Bicosoe... [more]
A0A7S2SVW1_9STRA6.970e-1663.27RING-type E3 ubiquitin transferase n=1 Tax=Rhizoch... [more]
A0A7S2XYA7_9STRA2.950e-1554.39RING-type E3 ubiquitin transferase n=1 Tax=Fibroca... [more]
A0A7S2SWX2_9STRA2.080e-1467.35RING-type E3 ubiquitin transferase n=1 Tax=Rhizoch... [more]
A0A8J5WZS5_DIALT3.440e-1363.79RING-type E3 ubiquitin transferase n=1 Tax=Diacron... [more]
A0A7S3C5X0_9EUKA3.570e-1259.32RING-type E3 ubiquitin transferase n=1 Tax=Haptoli... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 241..281
e-value: 7.7E-13
score: 48.1
NoneNo IPR availablePANTHERPTHR22996MAHOGUNINcoord: 176..286
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 236..284
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 222..287
e-value: 5.6E-16
score: 59.7
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 243..278
score: 11.575

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46318contigH-elongata_contig46318:971..2629 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46318.11722.1mRNA_H-elongata_contig46318.11722.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46318 914..3997 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46318.11722.1 ID=prot_H-elongata_contig46318.11722.1|Name=mRNA_H-elongata_contig46318.11722.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=359bp
MLGGGYDGGRGVNGSGGGGGRVGFGAHSAGGVGARGRDVSGCGKKTVRRS
LPAGNGRVFQALPGESYFRATPGEGSAAQGIASTSAWPRPSVGDSSPSDR
CSLAIVIRPAGVDTRGDWARWRHRPTHRVTRQVLLVQFKEREDASLEAQL
PQPPSAEVMRHLVAISEGGQGGVESIYSFSEVFGASEETEATRQTGPSAT
ASAVDSAHATAGFGSSSTLNASDESARHGADGGGRGERLPEECVICLTEP
KSTLLLPCRHLCVCSECFRHVDKCPVCRAAFDNYVVLEEPSPREAEGGRD
GGDGVPGTSGGASAGEGAVGTRGAPTAAEAGRAPPSTTDRRTIFAVARRR
AAAPEREA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING