prot_H-elongata_contig4625.11708.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig4625.11708.1
Unique Nameprot_H-elongata_contig4625.11708.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length133
Homology
BLAST of mRNA_H-elongata_contig4625.11708.1 vs. uniprot
Match: A0A6H5K494_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K494_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 4.850e-21
Identity = 57/160 (35.62%), Postives = 86/160 (53.75%), Query Frame = 0
Query:    1 MSAEIKDLTDSKIFTGLDKLPEGEKAVGSRWVFSYKQDKNGMIVKTKTGLVSQGFMQREGVNFFQTAAPTPAATSIK-------------------------IFR---DGNVILILVVYVDYMAVAGTEGEMSQLHAVLNEDFTTNDLGELSLFTGCVVA 132
            M  EI D   +  FT + +LPE  KA+GS+WVFS+K ++ G+IV  K  +V++G  Q  G++F+ +++  P+A SIK                         +FR   DG V  ++V++VD + VA  EGE  +L A LN+ F   DLGE   + GC +A
Sbjct:  342 MKKEIDDHDKTGTFTKVKELPERRKAIGSKWVFSWKTNEKGLIVDFKARVVARGLSQIPGIDFYHSSSACPSAASIKTVIAVATEKGKKVAHWDVKQAADPCVFRKVVDGEVEGLVVIHVDDILVAADEGEREELFASLNKKFPVKDLGECIWYDGCAIA 501          
BLAST of mRNA_H-elongata_contig4625.11708.1 vs. uniprot
Match: A0A6H5KGD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.790e-19
Identity = 59/192 (30.73%), Postives = 87/192 (45.31%), Query Frame = 0
Query:    1 MSAEIKDLTDSKIFTGLDKLPEGEKAVGSRWVFSYKQDKNGMIVKTKTGLVSQGFMQREGVNFFQTAAPTPAATSIK---------------------------------------------------------IFR---DGNVILILVVYVDYMAVAGTEGEMSQLHAVLNEDFTTNDLGELSLFTGCVVA 132
            M  EI     +  FT + +LPEG KA+GS+WVFS+K ++ G+IV  K  +V++GF Q  G +F  +++  P+A SIK                                                         +FR   DG V+ ++V+YVD + VA  EGE  +L A LN+ F   DLGE + + GC +A
Sbjct:  170 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDVKARIVARGFSQIPGTDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKKEIYLRFPEDYGNMPGKVVKVKRALVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIA 361          
BLAST of mRNA_H-elongata_contig4625.11708.1 vs. uniprot
Match: A0A6H5K0G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.030e-18
Identity = 57/180 (31.67%), Postives = 85/180 (47.22%), Query Frame = 0
Query:    1 MSAEIKDLTDSKIFTGLDKLPEGEKAVGSRWVFSYKQDKNGMIVKTKTGLVSQGFMQREGVNFFQTAAPTPAATSIK---------------------------------------------IFR---DGNVILILVVYVDYMAVAGTEGEMSQLHAVLNEDFTTNDLGELSLFTGCVVA 132
            M  EI     + IFT + +LPEG KA+ S+WVFS+K ++ G+IV  K  +V++GF Q  G++F  +++  P+A SIK                                             +FR   DG V+ ++V+YVD + V   EGE  +L A LN+ F    LGE +   GC +A
Sbjct:  822 MKKEIDGHDKTGIFTKVKELPEGRKAISSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATAKGKNLAHWDVKQAYIHAKLKXYALIEDGYEQCTVDPCVFRKVVDGEVVGLIVIYVDDILVVADEGEREELFASLNKKFPVKYLGECTWCDGCAIA 1001          
BLAST of mRNA_H-elongata_contig4625.11708.1 vs. uniprot
Match: A0A6H5KBK7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 8.030e-16
Identity = 57/199 (28.64%), Postives = 85/199 (42.71%), Query Frame = 0
Query:    1 MSAEIKDLTDSKIFTGLDKLPEGEKAVGSRWVFSYKQDKNGMIVKTKTGLVSQGFMQREGVNFFQTAAPTPAATSIK----------------------------------------------------------------IFR---DGNVILILVVYVDYMAVAGTEGEMSQLHAVLNEDFTTNDLGELSLFTGCVVA 132
            M  EI     +   T + + PEG KA+GS+WVFS+K ++  +IV  K  +VS+GF Q  G++F  +++  P+A SIK                                                                +FR   DG V+ ++V+YVD + VA  EGE  +L A LN+ F   DLGE + + GC +A
Sbjct:  716 MKKEIDGHGKTGTLTKVKEPPEGRKAIGSKWVFSWKTNEEVLIVDFKARMVSRGFSQIPGIDFHHSSSACPSAASIKTVFAVATEEGKKLAHCDVKQAMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFAALNKKFPVKDLGECTWYDGCAIA 914          
BLAST of mRNA_H-elongata_contig4625.11708.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.480e-15
Identity = 59/219 (26.94%), Postives = 88/219 (40.18%), Query Frame = 0
Query:    1 MSAEIKDLTDSKIFTGLDKLPEGEKAVGSRWVFSYKQDKNGMIVKTKTGLVSQGFMQREGVNFFQTAAPTPAATSIK------------------------------------------------------------------------------------IFR---DGNVILILVVYVDYMAVAGTEGEMSQLHAVLNEDFTTNDLGELSLFTGCVVA 132
            M  EI     +  FT + +LPEG KA+GS+WVFS+K ++ G+IV  K  +V++GF Q  G++F  +++  P+A SIK                                                                                    +FR   DG V+ ++V+YVD + VA  EGE  +L A LN+ F   DLGE + + GC +A
Sbjct:  519 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIA 737          
BLAST of mRNA_H-elongata_contig4625.11708.1 vs. uniprot
Match: A0A6H5JDR8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.630e-15
Identity = 58/215 (26.98%), Postives = 87/215 (40.47%), Query Frame = 0
Query:    4 EIKDLTDSKIFTGLDKLPEGEKAVGSRWVFSYKQDKNGMIVKTKTGLVSQGFMQREGVNFFQTAAPTPAATSIK-----------------------------------------------------------------------------------IFR---DGNVILILVVYVDYMAVAGTEGEMSQLHAVLNEDFTTNDLGELSLFTGCVVA 132
            EI     ++ FT + +LPEG KA+GS+WVFS+K ++ G+IV  K  +V++GF Q  G++F  +++  P+A SIK                                                                                   +FR   DG V+ ++V+YVD + VA  EGE  +L A LN  F   DLGE + + GC +A
Sbjct:   22 EIDGHDKTRTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHVKLKEENLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNMKFPVKDLGECTWYDGCAIA 236          
BLAST of mRNA_H-elongata_contig4625.11708.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.750e-15
Identity = 59/219 (26.94%), Postives = 88/219 (40.18%), Query Frame = 0
Query:    1 MSAEIKDLTDSKIFTGLDKLPEGEKAVGSRWVFSYKQDKNGMIVKTKTGLVSQGFMQREGVNFFQTAAPTPAATSIK------------------------------------------------------------------------------------IFR---DGNVILILVVYVDYMAVAGTEGEMSQLHAVLNEDFTTNDLGELSLFTGCVVA 132
            M  EI     +  FT + +LPEG KA+GS+WVFS+K ++ G+IV  K  +V++GF Q  G++F  +++  P+A SIK                                                                                    +FR   DG V+ ++V+YVD + VA  EGE  +L A LN+ F   DLGE + + GC +A
Sbjct:  378 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIA 596          
BLAST of mRNA_H-elongata_contig4625.11708.1 vs. uniprot
Match: A0A6H5L9H4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9H4_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.070e-15
Identity = 57/219 (26.03%), Postives = 88/219 (40.18%), Query Frame = 0
Query:    1 MSAEIKDLTDSKIFTGLDKLPEGEKAVGSRWVFSYKQDKNGMIVKTKTGLVSQGFMQREGVNFFQTAAPTPAATSIK------------------------------------------------------------------------------------IFR---DGNVILILVVYVDYMAVAGTEGEMSQLHAVLNEDFTTNDLGELSLFTGCVVA 132
            M  EI     +  FT + +LPEG KA+GS+WVFS+K ++ G+IV  K  +V++GF Q  G++F  +++  P+A SIK                                                                                    +FR   DG V+ ++V+YVD + VA  EGE  +L A  N++F   +LGE + + GC +A
Sbjct:  209 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDVKARMVARGFSQTPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAFIHAKLKEEIYLRFPEGCGSMFGKAVKVERALYGLKQSGREWGFEAADALIENGYEQCRADPCVFRKLVDGEVVGLIVIYVDDILVAADEGEREELFASFNKNFPVKNLGECAWYDGCAIA 427          
BLAST of mRNA_H-elongata_contig4625.11708.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.630e-15
Identity = 58/219 (26.48%), Postives = 88/219 (40.18%), Query Frame = 0
Query:    1 MSAEIKDLTDSKIFTGLDKLPEGEKAVGSRWVFSYKQDKNGMIVKTKTGLVSQGFMQREGVNFFQTAAPTPAATSIK------------------------------------------------------------------------------------IFR---DGNVILILVVYVDYMAVAGTEGEMSQLHAVLNEDFTTNDLGELSLFTGCVVA 132
            M  EI     +  FT + +LPEG KA+GS+WVFS+K ++ G+IV  K  +V++GF Q  G++F  +++  P+A SIK                                                                                    +FR   DG V+ ++V+YVD + VA  EGE  +L A LN+ F   D+GE + + GC +A
Sbjct:  232 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGEREELFASLNKKFPVKDVGECTWYDGCAIA 450          
BLAST of mRNA_H-elongata_contig4625.11708.1 vs. uniprot
Match: A0A6H5KZ24_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ24_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 9.280e-15
Identity = 57/216 (26.39%), Postives = 88/216 (40.74%), Query Frame = 0
Query:    4 EIKDLTDSKIFTGLDKLPEGEKAVGSRWVFSYKQDKNGMIVKTKTGLVSQGFMQREGVNFFQTAAPTPAATSIK------------------------------------------------------------------------------------IFR---DGNVILILVVYVDYMAVAGTEGEMSQLHAVLNEDFTTNDLGELSLFTGCVVA 132
            EI     +  FT + +LPEG KA+GS+WVFS+K+++ G+IV  K  +V++GF Q  G++F  +++  P+A SIK                                                                                    +F+   DG V+ ++V+YVD + VA  EGE  +L A LN+ F   DLGE + + GC +A
Sbjct:  287 EIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKKNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFQKVVDGEVVGLIVIYVDDIIVAADEGEPEELFASLNKKFPVKDLGECTCYDGCAIA 502          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4625.11708.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K494_9PHAE4.850e-2135.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGD1_9PHAE2.790e-1930.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0G6_9PHAE3.030e-1831.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBK7_9PHAE8.030e-1628.64CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JI74_9PHAE1.480e-1526.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JDR8_9PHAE2.630e-1526.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE2.750e-1526.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L9H4_9PHAE3.070e-1526.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE3.630e-1526.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KZ24_9PHAE9.280e-1526.39Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 18..79
e-value: 8.8E-11
score: 41.9
NoneNo IPR availablePANTHERPTHR11439:SF267coord: 18..66
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 18..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4625contigH-elongata_contig4625:11425..12087 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4625.11708.1mRNA_H-elongata_contig4625.11708.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig4625 11425..12102 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig4625.11708.1 ID=prot_H-elongata_contig4625.11708.1|Name=mRNA_H-elongata_contig4625.11708.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MSAEIKDLTDSKIFTGLDKLPEGEKAVGSRWVFSYKQDKNGMIVKTKTGL
VSQGFMQREGVNFFQTAAPTPAATSIKIFRDGNVILILVVYVDYMAVAGT
EGEMSQLHAVLNEDFTTNDLGELSLFTGCVVAQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like