prot_H-elongata_contig46206.11703.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46206.11703.1
Unique Nameprot_H-elongata_contig46206.11703.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length223
Homology
BLAST of mRNA_H-elongata_contig46206.11703.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.610e-7
Identity = 51/181 (28.18%), Postives = 82/181 (45.30%), Query Frame = 0
Query:   48 ADSTRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDALMRVYPATALIHPRRGGKPPFSRPLPPENGLVEIKVRRQVAARSRLPKPPTATALAA-TQRGPR-----DIMKLHQVLGYPAEQIARNTARMSGVQLSGIWRPCVHCSESRVRRYAVPKSTENQTDRRAGRLFIDLSGPFHETSLG 222
            ADS   + LK+V + PNLG +NL S     +F             +     G+  F       +G++       +A+  RL +    T LAA T   P+     DI + H +  +  E + R TA+  G +L G    C  CS S+  R  + + T+ ++D++ GR+F+DL G     S+G
Sbjct:   41 ADSEFSVELKNVLYSPNLG-YNLFSPS--AEFDGESWNGLGGPDGVMTAFNGQVTFQN----FDGML-------IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVG 207          
BLAST of mRNA_H-elongata_contig46206.11703.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 4.770e-6
Identity = 34/107 (31.78%), Postives = 55/107 (51.40%), Query Frame = 0
Query:  122 VAARSRLPKPPTATALAA-TQRGPR-----DIMKLHQVLGYPAEQIARNTARMSGVQLSGIWRPCVHCSESRVRRYAVPKSTENQTDRRAGRLFIDLSGPFHETSLG 222
            +A+  RL +    T LAA T   P+     DI + H +  +  E + R TA+  G +L G    C  CS S+  R  + + T+ ++D++ GR+F+DL G     S+G
Sbjct:  223 IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVG 329          
BLAST of mRNA_H-elongata_contig46206.11703.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.660e-6
Identity = 25/77 (32.47%), Postives = 42/77 (54.55%), Query Frame = 0
Query:  146 DIMKLHQVLGYPAEQIARNTARMSGVQLSGIWRPCVHCSESRVRRYAVPKSTENQTDRRAGRLFIDLSGPFHETSLG 222
            D+   H + G+  E + R TA+  G++L+G    C  CS  +  R A+   T N +D++ GR+F++L G     S+G
Sbjct:  392 DVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIG 468          
BLAST of mRNA_H-elongata_contig46206.11703.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.760e-5
Identity = 23/77 (29.87%), Postives = 43/77 (55.84%), Query Frame = 0
Query:  146 DIMKLHQVLGYPAEQIARNTARMSGVQLSGIWRPCVHCSESRVRRYAVPKSTENQTDRRAGRLFIDLSGPFHETSLG 222
            D+ + H +  +  E + R TA+  G++L+G    C  CS S+  +  +   T+ ++D++ GR+F+DL G     S+G
Sbjct:  571 DVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVG 647          
BLAST of mRNA_H-elongata_contig46206.11703.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.850e-5
Identity = 34/107 (31.78%), Postives = 54/107 (50.47%), Query Frame = 0
Query:  122 VAARSRLPKPPTATALAA-TQRGPR-----DIMKLHQVLGYPAEQIARNTARMSGVQLSGIWRPCVHCSESRVRRYAVPKSTENQTDRRAGRLFIDLSGPFHETSLG 222
            +A+  RL +    T LAA T   P+     DI + H +  +  E + R TA+  G +L G    C  CS S+  R  +   T+ ++D++ GR+F+DL G     S+G
Sbjct:  156 IASAYRLGEASVGTVLAALTPANPKHETTMDINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVG 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46206.11703.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L3Y0_9PHAE3.610e-728.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE4.770e-631.78Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JH25_9PHAE5.660e-632.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M6_9PHAE1.760e-529.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE1.850e-531.78Integrase catalytic domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46206contigH-elongata_contig46206:1978..2646 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46206.11703.1mRNA_H-elongata_contig46206.11703.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46206 1438..2676 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46206.11703.1 ID=prot_H-elongata_contig46206.11703.1|Name=mRNA_H-elongata_contig46206.11703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
MAQDPVGLEDYTPAPAGDRVESADGTFLSVAGYGYLLLLVDQGKGNFADS
TRQLTLKHVAHVPNLGQHNLLSTKRLTQFFDALMRVYPATALIHPRRGGK
PPFSRPLPPENGLVEIKVRRQVAARSRLPKPPTATALAATQRGPRDIMKL
HQVLGYPAEQIARNTARMSGVQLSGIWRPCVHCSESRVRRYAVPKSTENQ
TDRRAGRLFIDLSGPFHETSLG*
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