prot_H-elongata_contig46170.11698.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig46170.11698.1
Unique Nameprot_H-elongata_contig46170.11698.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length387
Homology
BLAST of mRNA_H-elongata_contig46170.11698.1 vs. uniprot
Match: A0A0V0T740_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Trichinella TaxID=6333 RepID=A0A0V0T740_9BILA)

HSP 1 Score: 125 bits (315), Expect = 1.160e-27
Identity = 119/407 (29.24%), Postives = 178/407 (43.73%), Query Frame = 0
Query:    1 MESK-SDRLWAKAMAYACDIWNRCTSSSLDSGTSPYELWYGRRLTFDNIPPSGTVGYLRRSKPGH-KLAHRGASCIILGLVPDCL---------RDTFRVRDLNI-GQILNRQAVTWHPPTGGEGNTPLSAPSRTTHRRLPVRRTKTTGYTSTSSTLEVVQEEPEEETPESQPRDDLSERSEXXXXXXXXXXXXXXXXXXXDLDYKPEGRVKEKESSSAAQKVPAAGVPTCGSARQLDP--EPTTMGEAQVSSEWPQWKRAIAREMNGQTARGVWQMVERPKGKTMLGTRVVFKRKIDKDGRIEKNKCRLVAQGFRQVKGIYYEQSSSPTPAQASIRIVLGMIAALGWEARQLDVDMAYLEAEVKEEIYTELPEAYRDSRK----------QVGLLKKAMYGLVRAG 383
            +ESK S   WA+A++ AC I NRC S SL+ G  P  LW GR+LT +     G   Y+    PG  K + R   CI +G   +           R   R RD+   G+  N +  T H PT      P +         L ++ T      +  S   +VQ E E+ T E++    L  R                            GR K+       Q V      TCG+   +    +P ++ EA    E  +W  A+ RE         W++V RP+ + ++  + V+  K + DG I++ K RLVA+GF Q   I + ++ +P    +SIR +L + A  G  A QLD   AYL  E++EEIY E+PE   +  K          +V  ++KA+YGL ++G
Sbjct:  790 LESKLSLNFWAEAISTACYIRNRCPSKSLN-GEIPLTLWNGRKLTLNYFRTFGEKAYVLDKSPGKGKFSTRSKECIFIGYSTESKAYRLWCPAERKVLRSRDVKFTGKFGNDE--TLHQPTAQNQEWPANDTCEKETETLELQLTTNESNDTHQSGGTLVQNEAEQVT-ETRKMKVLPGRPRLVRSGR-------------------RGRPKKVYRKEEVQPV------TCGNVASIAEMNDPKSVTEALSCRESKEWLEAMKREYEALVKNNTWEIVNRPQRQKVVACQWVYNTKFNADGSIKQRKARLVAKGFLQRPNIDFHETYAPVARLSSIRTILAISANYGLIAHQLDFVSAYLNGEIEEEIYMEIPEKLDEVLKCSKVKQNLDGKVCRIRKALYGLKQSG 1167          
BLAST of mRNA_H-elongata_contig46170.11698.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU)

HSP 1 Score: 122 bits (305), Expect = 2.300e-26
Identity = 66/161 (40.99%), Postives = 99/161 (61.49%), Query Frame = 0
Query:  225 LDPEPTTMGEAQVSSEWPQWKRAIAREMNGQTARGVWQMVERPKGKTMLGTRVVFKRKIDKDGRIEKNKCRLVAQGFRQVKGIYYEQSSSPTPAQASIRIVLGMIAALGWEARQLDVDMAYLEAEVKEEIYTELPE--AYRDSRKQVGLLKKAMYGLVRAG 383
            L  +PT++ EAQ + +WP+W+ AI  EM+   A   + +V RP G  ++G+R+VF RK D DG I++ K R+VAQGF Q+ G+ Y ++ +P    +S+RI+L + A   W   QLDV  AYL  ++ EEIY   P   A +     V  L+K++YGL +AG
Sbjct:  984 LSGDPTSLREAQEAPDWPKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADGSIKQCKVRVVAQGFGQIPGVDYNETFAPVAKSSSLRIMLALAARFSWPLIQLDVKSAYLNGDLDEEIYMRQPPGTAAQGEEHLVCRLRKSLYGLKQAG 1144          
BLAST of mRNA_H-elongata_contig46170.11698.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 113 bits (282), Expect = 3.790e-26
Identity = 61/164 (37.20%), Postives = 95/164 (57.93%), Query Frame = 0
Query:  228 EPTTMGEAQVSSEWPQWKRAIAREMNGQTARGVWQMVERPKGKTMLGTRVVFKRKIDKDGRIEKNKCRLVAQGFRQVKGIYYEQSSSPTPAQASIRIVLGMIAALGWEARQLDVDMAYLEAEVKEEIYTELPEAY--------RDSRKQVGLLKKAMYGLVRAG 383
            +P T  +A  S     WK+A+  E N       W +V+RP+GKT++G+R VF+ K+  DG +E+ K RLVA+GF Q+ G +Y ++ +     +SIR V+ + A    E  QLD   AYL  E++EEIY E+P+          +D   +V  ++KA+YGL ++G
Sbjct:   16 DPMTPKQALESPYAEDWKKAMLEEYNSLEKNKTWTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSG 179          
BLAST of mRNA_H-elongata_contig46170.11698.1 vs. uniprot
Match: A0A0A9W6P7_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9W6P7_LYGHE)

HSP 1 Score: 120 bits (302), Expect = 5.260e-26
Identity = 120/386 (31.09%), Postives = 186/386 (48.19%), Query Frame = 0
Query:    9 WAKAMAYACDIWNRCTSSSLDSGTSPYELWYGRRLTFDNIPPSGTVGYLRRSKPGHK-LAHRGASCIILGLVPDCLRDTFRVRD-LNIGQILNRQAVTWHPPTGGEGNTPLSAP-------SRTTHRRLPVRRTKTTGYTSTSSTLEVVQEEPEEETPESQPRDDLSERSEXXXXXXXXXXXXXXXXXXXDLDYKPEGRVKEKESSSAAQKVPAAGVPTCGSARQLDPEPTTMGEAQVSSEWPQWKRAIAREMNGQTARGVWQMVERPKGKTMLGTRVVFKRKIDKDGRIEKNKCRLVAQGFRQVKGIYYEQSSSPTPAQASIRIVLGMIAALGWEARQLDVDMAYLEAEVKEEIYTELPEAY--RDSRKQVGLLKKAMYGLVRAG 383
            WA+A+  AC I N+C ++S      P ++W GR+ +  ++ P G   ++   +P  K L  R   CI+LG         +R+ D +N   I++R  +        E +   +         S TT   + +       +T+ +ST  V      EE  +++ R + +E +E       XXXXXXXXXXXX  D     +      +    K P      CG +++   EP T  +A    +   WK A+  E+       VW++ + P GK+ +G + VFK K   DG +E+ K RLVAQGF Q  G+ Y ++ SP  +  +IR+ L +     W   Q+DV  AYL  E+KEEIY  LPE     +S K+V  L K++YGL ++G
Sbjct:  451 WAEAVNTACYIRNKCPTTS--KNIIPEQIWTGRKPSVRHLRPFGCKAFVHVPEPRRKKLDDRSQICIMLGY--SSATKGYRLWDPINKRVIVSRDVIFDEKALVPESSIQNNVEDYFEIVYSETTRESMDIN-----NHTNEASTGGVDSRIEVEEIEQNR-RLNSTESNEQLQTNYEXXXXXXXXXXXXXXDVAQPSQFSMVLRNRETIKRPEYLNDYCGLSQEKK-EPKTFKQAMDGPDHKLWKEAVEEELTSLKNMNVWELTDLPPGKSAIGCKWVFKIKYLADGSVERYKARLVAQGFTQEYGVDYNETYSPVVSLPTIRLFLKLAVENNWLVHQMDVKTAYLNGELKEEIYMRLPEGIITEESEKKVCRLLKSLYGLKQSG 825          
BLAST of mRNA_H-elongata_contig46170.11698.1 vs. uniprot
Match: A0A2G8RTP0_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RTP0_9APHY)

HSP 1 Score: 120 bits (302), Expect = 5.640e-26
Identity = 64/161 (39.75%), Postives = 101/161 (62.73%), Query Frame = 0
Query:  225 LDPEPTTMGEAQVSSEWPQWKRAIAREMNGQTARGVWQMVERPKGKTMLGTRVVFKRKIDKDGRIEKNKCRLVAQGFRQVKGIYYEQSSSPTPAQASIRIVLGMIAALGWEARQLDVDMAYLEAEVKEEIYTELPE--AYRDSRKQVGLLKKAMYGLVRAG 383
            L  +P T+ EAQ + +W +W++AI+ EM    A G +++V +P G  ++G+++VF RK + +G + ++K R+VAQGF QV GI ++Q+ +P    +S+R+++ + A  GW   QLDV  AYL  E+ E IY   P   A       V LLKK++YGL +AG
Sbjct:  996 LSCDPRTLREAQEAPDWVEWEKAISVEMENLKAHGTYELVAKPHGAHVIGSKLVFHRKRNAEGAVTQHKVRVVAQGFAQVPGIEFDQTFAPVAKPSSLRLMIALAARFGWPMIQLDVKSAYLNGELDEVIYMRQPPGTAAHGEEHLVCLLKKSLYGLKQAG 1156          
BLAST of mRNA_H-elongata_contig46170.11698.1 vs. uniprot
Match: A0A0V1D8H9_TRIBR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella britovi TaxID=45882 RepID=A0A0V1D8H9_TRIBR)

HSP 1 Score: 120 bits (300), Expect = 8.510e-26
Identity = 118/405 (29.14%), Postives = 174/405 (42.96%), Query Frame = 0
Query:    1 MESK-SDRLWAKAMAYACDIWNRCTSSSLDSGTSPYELWYGRRLTFDNIPPSGTVGYLRRSKPGH-KLAHRGASCIILGLVPDCL---------RDTFRVRDLNI-GQILNRQAVTWHPPTGGEGNTPLSAPSRTTHRRLPVRRTKTTGYTSTSSTLEVVQEEPEEETPESQPRDDLSERSEXXXXXXXXXXXXXXXXXXXDLDYKPEGRVKEKESSSAAQKVPAAGVPTCGSARQLDPEPTTMGEAQVSSEWPQWKRAIAREMNGQTARGVWQMVERPKGKTMLGTRVVFKRKIDKDGRIEKNKCRLVAQGFRQVKGIYYEQSSSPTPAQASIRIVLGMIAALGWEARQLDVDMAYLEAEVKEEIYTELPEAYRDSRK----------QVGLLKKAMYGLVRAG 383
            +ESK S   WA+A++  C I NRC S  L+ G  P  LW GR+LT +     G   Y+    PG  K + R   CI +G   +           R   R RD+   G+  N +  T H PT      P +         L ++ T      +  S   +VQ E E+ T E++    L  R                            GR K+       Q V    V +   A   DP+  T  EA    E  +W  A+ RE         W++V RP+ + ++  + V+  K + DG I++ K RLVA+GF Q   I + ++ +P    +SIR +L + A  G  A QLD   AYL  E++EEIY E+PE   +  K          +V  ++KA+YGL ++G
Sbjct:  156 LESKLSLNFWAEAISTGCYIRNRCPSKILN-GEIPLTLWNGRKLTLNYFRTFGEKAYVLDKSPGKGKFSTRSKECIFIGYSTESKAYRLWCPAERKVLRSRDVKFTGKFGNDE--TLHQPTAQNQEWPANDTCEKETETLELQLTTNESNDTHQSGGTLVQNEAEQVT-ETRKMKVLPGRPRLVRSGR-------------------RGRPKKVYRKEEVQPVTCENVASI--AEMNDPKSVT--EALSCRESKEWLEAMKREYETLVKNNTWEIVNRPQRQKVIACQWVYNTKFNADGSIKQRKARLVAKGFLQRPNIDFHETYAPVARLSSIRTILAISANYGLIAHQLDFVSAYLNGEIEEEIYMEIPEKLDEVLKCSKMKQNLDGKVCRIRKALYGLKQSG 533          
BLAST of mRNA_H-elongata_contig46170.11698.1 vs. uniprot
Match: A0A177TMV6_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TMV6_9BASI)

HSP 1 Score: 120 bits (300), Expect = 9.620e-26
Identity = 64/179 (35.75%), Postives = 102/179 (56.98%), Query Frame = 0
Query:  205 SSAAQKVPAAGVPTCGSARQLDPEPTTMGEAQVSSEWPQWKRAIAREMNGQTARGVWQMVERPKGKTMLGTRVVFKRKIDKDGRIEKNKCRLVAQGFRQVKGIYYEQSSSPTPAQASIRIVLGMIAALGWEARQLDVDMAYLEAEVKEEIYTELPEAYRDSRKQVGLLKKAMYGLVRAG 383
            S+AA    A G P       L+P+     + +   EW  W++A+  E++     G W +V+ PKG+ M+G+R VFK K+D++G   + K RLVAQGF Q +GI + ++ +P     +IRI + +  A G     +D+  AYL  ++ EE+Y + P  Y D   +V LL++A+YGL +AG
Sbjct:  677 SAAAHGTAADGTP-------LEPQNLKQAKLRPQHEWHNWQKAMGEEVSSLKEMGTWTLVDLPKGREMVGSRWVFKLKLDREGCAARYKARLVAQGFTQREGIDFSETFAPVARLGTIRITISLALAFGLNLHSIDIKTAYLNGKLSEEVYIQQPPEYDDGTGRVCLLRRAIYGLKQAG 848          
BLAST of mRNA_H-elongata_contig46170.11698.1 vs. uniprot
Match: A0A5K1K0E1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0E1_9APHY)

HSP 1 Score: 119 bits (299), Expect = 1.110e-25
Identity = 62/158 (39.24%), Postives = 99/158 (62.66%), Query Frame = 0
Query:  228 EPTTMGEAQVSSEWPQWKRAIAREMNGQTARGVWQMVERPKGKTMLGTRVVFKRKIDKDGRIEKNKCRLVAQGFRQVKGIYYEQSSSPTPAQASIRIVLGMIAALGWEARQLDVDMAYLEAEVKEEIYTELPEAYRDSRKQ--VGLLKKAMYGLVRAG 383
            +P ++ EAQ S +WPQW+RAI  EM    A G + +V +P G  ++G+++VF RK + +G + + K R+VAQGF Q+ GI + ++ +P    +S+R+++ + A  GW   QLDV  AYL  ++ EEIY   P     + ++  V  LKK++YGL +AG
Sbjct:  321 DPLSLREAQASPDWPQWERAIEVEMENLRAHGTYDLVVKPPGAHVIGSKLVFHRKRNAEGAVTQCKVRVVAQGFAQIPGIDFNETFAPVAKPSSLRVMIALAARFGWPMIQLDVKSAYLNGDLDEEIYMRQPPGTAAAGEEHLVCRLKKSLYGLKQAG 478          
BLAST of mRNA_H-elongata_contig46170.11698.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 119 bits (299), Expect = 1.370e-25
Identity = 71/187 (37.97%), Postives = 111/187 (59.36%), Query Frame = 0
Query:  201 EKESSSAAQK--VPAAGVPTCGSARQLDPEPTTMGEAQVSSEWPQWKRAIAREMNGQTARGVWQMVERPKGKTMLGTRVVFKRKIDKDGRIEKNKCRLVAQGFRQVKGIYYEQSSSPTPAQASIRIVLGMIAALGWEARQLDVDMAYLEAEVKEEIYTELP--EAYRDSRKQVGLLKKAMYGLVRAG 383
            E E S + Q+   P   +P   + R+   EP ++ EA  S +WPQW++AI +EM        + +VE P+   ++G++ VF+ K + +G+IE  K RLVAQGF Q+ GI +  + +P    ASIRI+L + A   W+  Q+DV  AYL A+++EEI+ + P  +A R     V LL+ A+YGL ++G
Sbjct:  931 EAEESESEQEGDEPIFAMPAAFAVREGQ-EPRSLEEAMQSPDWPQWQKAIEKEMRNLRDHHTYDLVEPPENTNVVGSKFVFRIKRNANGKIESYKARLVAQGFSQIPGIDFNDTFAPVAKLASIRIILALAARHDWDVHQMDVKGAYLNADLEEEIFMKQPPGQAKRGKEHWVCLLRHAIYGLKQSG 1116          
BLAST of mRNA_H-elongata_contig46170.11698.1 vs. uniprot
Match: A0A177U0B1_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177U0B1_9BASI)

HSP 1 Score: 118 bits (296), Expect = 1.390e-25
Identity = 63/171 (36.84%), Postives = 100/171 (58.48%), Query Frame = 0
Query:  213 AAGVPTCGSARQLDPEPTTMGEAQVSSEWPQWKRAIAREMNGQTARGVWQMVERPKGKTMLGTRVVFKRKIDKDGRIEKNKCRLVAQGFRQVKGIYYEQSSSPTPAQASIRIVLGMIAALGWEARQLDVDMAYLEAEVKEEIYTELPEAYRDSRKQVGLLKKAMYGLVRAG 383
            AA   T      L+P      + + S+EW QWK+A+  E+   T  G W +VE   G  ++G+R V+K K+D+DG   + K RLVAQGF Q +GI ++++ +P     ++R+V+ +  ALG     +D+  AYL  ++ EE+Y + P  Y D   +V LL++A+YGL +AG
Sbjct:    9 AAAHGTSADGSPLEPVNLKQAKNRPSAEWAQWKQAMDEEVASLTEMGTWVLVEPRSGHNIVGSRWVYKLKLDRDGNAARYKARLVAQGFTQREGIDFKETFAPVARLVTVRLVISVALALGLHLGSIDIKTAYLNGKLHEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAG 179          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig46170.11698.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0V0T740_9BILA1.160e-2729.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2V8C6_TRAPU2.300e-2640.99Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9Y7J8_LYGHE3.790e-2637.20Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9W6P7_LYGHE5.260e-2631.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G8RTP0_9APHY5.640e-2639.75Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A0V1D8H9_TRIBR8.510e-2629.14Retrovirus-related Pol polyprotein from transposon... [more]
A0A177TMV6_9BASI9.620e-2635.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A5K1K0E1_9APHY1.110e-2539.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401GQU1_9APHY1.370e-2537.97Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
A0A177U0B1_9BASI1.390e-2536.84Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 260..384
e-value: 9.1E-27
score: 94.2
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 137..379
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 137..379

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig46170contigH-elongata_contig46170:2146..3480 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig46170.11698.1mRNA_H-elongata_contig46170.11698.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig46170 1606..4166 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig46170.11698.1 ID=prot_H-elongata_contig46170.11698.1|Name=mRNA_H-elongata_contig46170.11698.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=387bp
MESKSDRLWAKAMAYACDIWNRCTSSSLDSGTSPYELWYGRRLTFDNIPP
SGTVGYLRRSKPGHKLAHRGASCIILGLVPDCLRDTFRVRDLNIGQILNR
QAVTWHPPTGGEGNTPLSAPSRTTHRRLPVRRTKTTGYTSTSSTLEVVQE
EPEEETPESQPRDDLSERSESADDASELGELRDDGPERGDLDYKPEGRVK
EKESSSAAQKVPAAGVPTCGSARQLDPEPTTMGEAQVSSEWPQWKRAIAR
EMNGQTARGVWQMVERPKGKTMLGTRVVFKRKIDKDGRIEKNKCRLVAQG
FRQVKGIYYEQSSSPTPAQASIRIVLGMIAALGWEARQLDVDMAYLEAEV
KEEIYTELPEAYRDSRKQVGLLKKAMYGLVRAGLLC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like