prot_H-elongata_contig46043.11679.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig46043.11679.1
Unique Name	prot_H-elongata_contig46043.11679.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	274

Homology

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BLAST of mRNA_H-elongata_contig46043.11679.1 vs. uniprot
Match: A0A6H5JBH8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH8_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.520e-40
Identity = 99/199 (49.75%), Postives = 112/199 (56.28%), Query Frame = 0

Query:  100 RFARNGGVDAKSFQRMWRERYTV-------------------RVGMATAVEQGVDEGVGSGEVAADRSFEFGKLFQNYDTDGDGKLSRVEFERMVTGMLSGLGQTKHDSTEAHQENGGDNGKHWGEGGDDKVPGKALAAVLPPPSPLS-----GGGMITHYDETTGVPLSREAVASQQTLGHTVVPLNEAYSRRLSRLQ 274
            RFARNGGVDAK FQR+WRER  +                   R G     E   +EG   G V  ++ FEFGKLFQ +DTDGDG+L R +FER+V GML  +G           E GGD  +    GG+        AA  P P          G  ITHYDETTGVPL+REAVASQQ LGHTVVPL EAYSRRLSRLQ
Sbjct:    7 RFARNGGVDAKDFQRVWREREHLFSEPDPAPGGDVGGREEASRPGGEARREGRREEG--GGGVGPEKIFEFGKLFQKFDTDGDGRLGRADFERLVGGMLEQVG-----------ERGGDGTRRGSRGGEXDNGNAPSAAPQPLPXXXXXXXXXAGPSITHYDETTGVPLAREAVASQQALGHTVVPLREAYSRRLSRLQ 192

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BLAST of mRNA_H-elongata_contig46043.11679.1 vs. uniprot
Match: D7FKD4_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD4_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.230e-27
Identity = 69/132 (52.27%), Postives = 80/132 (60.61%), Query Frame = 0

Query:  143 VAADRSFEFGKLFQNYDTDGDGKLSRVEFERMVTGMLSGLGQTKHDSTEAHQENGGDNGKHWGEGGDDKVPGKALAAVLPPPSPLSGGGMITHYDETTGVPLSREAVASQQTLGHTVVPLNEAYSRRLSRLQ 274
            + +++ FEFG+LFQ +DTDGDG+L R +FERMV GML   G+   D T      G                           SP+  G  ITHYDETTGVPL+REAVASQQ LGHTVVPL EAYSRRLSRLQ
Sbjct:    1 MGSEKIFEFGQLFQKFDTDGDGRLGRADFERMVGGMLEQFGERGEDGT----RRGXXXXXXXXXXXXXXXXXXXXXXXXXXXSPV--GPSITHYDETTGVPLAREAVASQQALGHTVVPLREAYSRRLSRLQ 126

[Close]

BLAST of mRNA_H-elongata_contig46043.11679.1 vs. uniprot
Match: A0A835Z0R6_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.330e-14
Identity = 55/153 (35.95%), Postives = 76/153 (49.67%), Query Frame = 0

Query:  149 FEFGKLFQNYDTDGDGKLSRVEFERMVTGMLSGLGQTK-------------------------HDSTEAHQENGGDNGKHWGEGGDDKVPGKALAAVLPPPS-PLSGGGM-ITHYDETTGVPLSREAVASQQTLGHTVVPLNEAYSRRLSRLQ 274
            FE G+LF+ +D+D DG+L+R EFE+++   +    Q                           H   + H      N   W +      P  A +A  P    P+  G + +THY+ET GVPL ++AV  Q  LGHTVVPL+EAYSRRL+RLQ
Sbjct:   48 FEIGQLFERFDSDKDGRLTRAEFEKLMNLRVQQQRQQAPDPDQYSAATAPTRLPGSPSPPRPPHHQRQRHMAADAPN-MRWSQ------PAPAASAAAPSYGYPILPGALPLTHYNETAGVPLRKDAVEEQVALGHTVVPLHEAYSRRLARLQ 193

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig46043.11679.1 vs. uniprot

BLAST of mRNA_H-elongata_contig46043.11679.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5JBH8_9PHAE	2.520e-40	49.75	EF-hand domain-containing protein n=1 Tax=Ectocarp...	[more]
D7FKD4_ECTSI	2.230e-27	52.27	EF-hand domain-containing protein n=1 Tax=Ectocarp...	[more]
A0A835Z0R6_9STRA	6.330e-14	35.95	EF-hand domain-containing protein n=1 Tax=Tribonem...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 150..178 e-value: 6.3E-4 score: 29.1
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 146..181 score: 12.84
None	No IPR available	GENE3D	1.10.238.10		coord: 83..195 e-value: 1.8E-6 score: 30.2
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 159..171
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 90..187

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig46043	contig	H-elongata_contig46043:160..2627 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig46043.11679.1	mRNA_H-elongata_contig46043.11679.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig46043 160..2627 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig46043.11679.1 ID=prot_H-elongata_contig46043.11679.1|Name=mRNA_H-elongata_contig46043.11679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=274bp
MPTSKEKNKHNREKVTKSLSKRDPSSPGKEKKKKSSSSKDRKSKSPSRSR
KKPEKDDEAAVAPEASTQRQPTSTTPPPSLPPDRDSVASSDFEAGLLFQR
FARNGGVDAKSFQRMWRERYTVRVGMATAVEQGVDEGVGSGEVAADRSFE
FGKLFQNYDTDGDGKLSRVEFERMVTGMLSGLGQTKHDSTEAHQENGGDN
GKHWGEGGDDKVPGKALAAVLPPPSPLSGGGMITHYDETTGVPLSREAVA
SQQTLGHTVVPLNEAYSRRLSRLQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR018247	EF_Hand_1_Ca_BS
IPR011992	EF-hand-dom_pair