prot_H-elongata_contig20556.5862.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20556.5862.1
Unique Nameprot_H-elongata_contig20556.5862.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length769
Homology
BLAST of mRNA_H-elongata_contig20556.5862.1 vs. uniprot
Match: D8LSB9_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB9_ECTSI)

HSP 1 Score: 606 bits (1563), Expect = 2.030e-203
Identity = 374/819 (45.67%), Postives = 493/819 (60.20%), Query Frame = 0
Query:    1 KVTYSEASSFLTEAIVVGLKPGELYQFYVAVVSTEKLLVPGSSAVSSPIRLPKASYEEAWFFEEGKSDIKWTAYEGVGPDCVKTLGGGXXXGYDSAPVALNALRCSPSRDRCYTGLQSLHLSVAPEFDGGGGAYVDTTVKGGRLYIVRARVFHEKSTSDDKEELGTN-----------------------------TRLLVWDTTNVKEASTPSTKRGEWELLECKIVPAVRSRRLRIAIHIDAEYQD-DIYVDAVEVHHGGSTPSELAIMSLVEELEEPRSLSPSKVLIRVESARNLKASDSTDTFGPFVKVMIGNIEIYRTKVSSITTSPVWDETFFALPETSGDADGVT-------EGIRFEIWDDNIQGGGDYYLGEVKMAAEEVAAAPPHRVEHVIVYGRPSGSTITATEDNSANPNSSPKKSRVRFLGSGRRGNSGF-ARAHPSFLALALLVSWPKNLNTIEGTLVATLLSE-GPLPARVKALKA-------RPRGSALKEHDNIADAARGKEALIRSGAPQAAVWVLPEPAFLKDACHLLMGLVHLPHDVKRTDAGFNLCRRLQAYVLLQSPTIVTVRCLHASIRESEILLALLEKLYIGRQATLREDVVSIPGFFFAIVVHVDDAASSQSLMREISRGSHDFPPGLTSLFRQHRRRIPAIPGLWKISVLEELLKEEDPPPDLERGGLEAEGVIASLELEKQ----QRDASLRTAVITESLRVAMLLTIPLCLVVVGGNRVGSRGSCEQPIGTLILADGLLLLQAVLGRTGAGFIPRRLKALPGVWIYSIILFTVVAHVGFVMGLLVAITKV 769
            KVTY EA S   EA++VGLKPG+ YQF VA +S E++LVPGSS VS P++LP+A YE+AWFFE G+ DIKW A+EG+GP+ V   GG XXX    +  AL+ +RCSPS  RC+TGL+SL L V       GGAYVDT VK G LY+V+A+VFHE+      +  G                               TRL++WD  + KE S P+ K GEWE LEC+IVP  RS  LR+AI    E ++ +IYVDAVE+ HGG TP+E AI + V+ ++EPR + PSKV +                         GN E++RTKV  +T SPVWDETFF  PET G  D          +GIRFE+WD ++ G GDY LGEV + ++ +  APPHRVEH  V     G+  +   D +A     PK    R    G RG  G  A   P+ LALA+ VSWPK+  + EG LV  L  E G L ARV ALK            +AL+   NI DAA+ K  L+RS A +AAVWVL +P FL+DAC LL+GLV L HD   ++AGF LCRRL+ +VL  SP +V VRCL AS+   EILL LL KLY+G+QA L EDVV+I GFF+++V+H+D +A +Q+L+R+IS G+ + P GL ++FR++R RIP +PGLW+ ++L++L  EE  PPDLE   LEA      L    +    + + SL    I   L VA++   PL   VVGG R+G+ GSCEQP+GT+++ DGL+L+ AV G        RR  AL G W++  +    + H+G V GLLV++ +V
Sbjct:   14 KVTYGEAPSHEAEAVIVGLKPGKAYQFLVASISAERMLVPGSSIVSDPVQLPEAEYEKAWFFEGGEDDIKWAAFEGLGPENVGAAGGXXXXXXXXS-TALDDIRCSPSPTRCFTGLRSLCLVVPAGL--AGGAYVDTPVKEGWLYVVKAKVFHEEEGGGVGDGAGAEAEGAGRKGSRLAMMTGWTAGRKGSKSNVTTRLVLWDMRDGKEMSAPAVKTGEWEALECQIVP-FRSEHLRVAIQSGGEGRESNIYVDAVELFHGGPTPAERAISAAVDLMDEPRPM-PSKVFV-------------------------GNAEVHRTKVIPMTLSPVWDETFFLSPETPGGGDANAPGLNADGDGIRFEMWDHDLHGQGDY-LGEVCLTSDALKVAPPHRVEHEAVKDPIRGAGDSG--DRTATEVVIPKLKPARTKRGGHRGRGGMGAVPPPTILALAIQVSWPKDPESAEGKLVRILQDEQGLLSARVNALKRILPTLLQELSMAALRAPRNIEDAAKAKILLLRSRAAEAAVWVLADPNFLEDACRLLIGLVQLGHDAGHSEAGFGLCRRLRLFVLQLSPAVVAVRCLRASVGPPEILLELLAKLYVGQQAALHEDVVNIRGFFYSLVLHIDTSAPAQALVRDISGGARELPDGLVAMFRRYRTRIPPLPGLWRPTMLQKLSAEEAHPPDLEGDDLEANEDDHDLNPASRGGNREEEPSLPDR-IRAHLTVALMAVPPLFKAVVGGRRIGAPGSCEQPVGTVLVLDGLVLMCAVFGGGCFRINRRRFSALAGTWLFPTLFLAFLLHLGLVAGLLVSLARV 798          
BLAST of mRNA_H-elongata_contig20556.5862.1 vs. uniprot
Match: A0A6H5L382_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L382_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 9.220e-54
Identity = 125/317 (39.43%), Postives = 177/317 (55.84%), Query Frame = 0
Query:  457 SALKEHDNIADAARGKEALIRSGAPQAAVWVLPEPAFLKDACHLLMGLVHLPHDVKRTDAGFNLCRRLQAYVLLQSPTIVTVRCLHASIRESEILLALLEKLYIGRQATLREDVVSIPGFFFAIVVHVDDAASSQSLMREISRGSHDFPPGLTSLFRQHRRRIPAIPGLWKISVLEELLKEEDPPPDLERGGLEAEGVIASLELEKQ----QRDASLRTAVITESLRVAMLLTIPLCLVVVGGNRVGSRGSCEQPIGTLILADGLLLLQAVLGRTGAGFIPRRLKALPGVWIYSIILFTVVAHVGFVMGLLVAITKV 769
            +AL+   NI DAA+ K  L+RS A +AAVWVL +P FL+DAC LL+GL                                             ILL  L KLY+G+QA L EDVV+I GFF+++V+H+D +A +Q+L+REIS G+ + P GL +LF ++R RIP +PGLW+ ++L+++  EE  PPDLE   LEA      L    +    + + SL    I   L VA++   PL   V GG RVG+ GSCEQP+GT+++ DGL+L+ AV G         R   L G W++  +L   + H+G V GLLV++ +V
Sbjct:    2 AALRAPRNIEDAAKAKILLLRSRAAEAAVWVLADPNFLEDACRLLIGL---------------------------------------------ILLEFLAKLYVGQQAALHEDVVNIRGFFYSLVLHIDTSAPAQALVREISGGARELPDGLVALFHRYRTRIPPLPGLWRSTMLQKISAEEAHPPDLEGDDLEANEDDHDLNPASRGGTREGEPSLPDR-IRAHLTVALMAMPPLFKAVAGGRRVGAPGSCEQPVGTVLVLDGLVLMCAVFGGGCFRINRHRFSILAGTWLFPTLLLAFLLHLGLVAGLLVSLARV 272          
BLAST of mRNA_H-elongata_contig20556.5862.1 vs. uniprot
Match: F0Y640_AURAN (Fibronectin type-III domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y640_AURAN)

HSP 1 Score: 62.4 bits (150), Expect = 3.640e-6
Identity = 72/246 (29.27%), Postives = 105/246 (42.68%), Query Frame = 0
Query:   15 IVVGLKPGELYQFYVAVV--------STEKLLVPGSSAVSSPIRLPKASYEEAWFFEEGKS-DIKWTAYEGV----GPDCVKTLGGGXXXGY---------DSAPVALNALRCSPSRDRCYTGLQSLHLSVAPEFDGGGGAYVDTTVKGGRLYIVRARVFHEKSTSDDKEEL------GTNTRLLVWDTTNVKEASTPSTKRGEWELLECKIVPAVRSRRLRIAIHIDAE----YQDDIYVDAVEV 228
            +V  LK    Y+F +A V          + ++V G+   S+PIR  KA+Y +A+FFEE +  D  W+ + G+    G      L  G              D  P A +     P R  C TG Q L L++    DGG     D  VK  R Y V   V+H+ ST  D+EEL       +   L+ +D  +    S  +    +WE LE +I+ A   R  +IA+         YQ  + +DA  V
Sbjct:  139 VVTSLKSDTEYEFQLAAVHDRAQKKGGAKPMIVDGTRVTSNPIRTTKATYCQAFFFEEPQEIDRLWSVFFGILTRGGEGGANALASGDDYVLAQKLTIAQSDPKPAAPSDDDPHP-RPCCLTGRQCLVLNLPGGLDGG--CCADIEVKESRRYRVEVFVYHDCST--DREELPHAVPHDSGCALVGFDYKDRYSESKRARMVRQWEKLEVEIIGAPGDRA-KIAVQATRSATRIYQGAVLLDACRV 378          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20556.5862.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSB9_ECTSI2.030e-20345.67C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L382_9PHAE9.220e-5439.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y640_AURAN3.640e-629.27Fibronectin type-III domain-containing protein n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainSMARTSM00239C2_3ccoord: 257..361
e-value: 2.6E-8
score: 43.6
IPR000008C2 domainPFAMPF00168C2coord: 258..351
e-value: 7.2E-10
score: 39.1
IPR000008C2 domainPROSITEPS50004C2coord: 255..346
score: 12.632
IPR035892C2 domain superfamilyGENE3D2.60.40.150coord: 241..374
e-value: 2.8E-15
score: 58.3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 678..695
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 725..743
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 744..766
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 696..706
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..677
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 707..724
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 767..769
NoneNo IPR availableSUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 256..366
NoneNo IPR availableTMHMMTMhelixcoord: 742..764

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20556contigH-elongata_contig20556:1..5686 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20556.5862.1mRNA_H-elongata_contig20556.5862.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20556 1..5686 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20556.5862.1 ID=prot_H-elongata_contig20556.5862.1|Name=mRNA_H-elongata_contig20556.5862.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=769bp
KVTYSEASSFLTEAIVVGLKPGELYQFYVAVVSTEKLLVPGSSAVSSPIR
LPKASYEEAWFFEEGKSDIKWTAYEGVGPDCVKTLGGGGGGGYDSAPVAL
NALRCSPSRDRCYTGLQSLHLSVAPEFDGGGGAYVDTTVKGGRLYIVRAR
VFHEKSTSDDKEELGTNTRLLVWDTTNVKEASTPSTKRGEWELLECKIVP
AVRSRRLRIAIHIDAEYQDDIYVDAVEVHHGGSTPSELAIMSLVEELEEP
RSLSPSKVLIRVESARNLKASDSTDTFGPFVKVMIGNIEIYRTKVSSITT
SPVWDETFFALPETSGDADGVTEGIRFEIWDDNIQGGGDYYLGEVKMAAE
EVAAAPPHRVEHVIVYGRPSGSTITATEDNSANPNSSPKKSRVRFLGSGR
RGNSGFARAHPSFLALALLVSWPKNLNTIEGTLVATLLSEGPLPARVKAL
KARPRGSALKEHDNIADAARGKEALIRSGAPQAAVWVLPEPAFLKDACHL
LMGLVHLPHDVKRTDAGFNLCRRLQAYVLLQSPTIVTVRCLHASIRESEI
LLALLEKLYIGRQATLREDVVSIPGFFFAIVVHVDDAASSQSLMREISRG
SHDFPPGLTSLFRQHRRRIPAIPGLWKISVLEELLKEEDPPPDLERGGLE
AEGVIASLELEKQQRDASLRTAVITESLRVAMLLTIPLCLVVVGGNRVGS
RGSCEQPIGTLILADGLLLLQAVLGRTGAGFIPRRLKALPGVWIYSIILF
TVVAHVGFVMGLLVAITKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR035892C2_domain_sf