prot_H-elongata_contig204951.5842.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig204951.5842.1
Unique Nameprot_H-elongata_contig204951.5842.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length38
Homology
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BLAST of mRNA_H-elongata_contig204951.5842.1 vs. uniprot
Match: D7FNN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN0_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 9.040e-7
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0 
Query:    1 MNITKENFEECFSTIRKAIKASHFIAVDAEFTGI 34
            MNITKENFE+ F  I +AI++SHFIA+D EFTG+
Sbjct:    1 MNITKENFEQSFDVICEAIRSSHFIALDTEFTGL 34
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204951.5842.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNN0_ECTSI9.040e-767.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 3..34
e-value: 3.5E-10
score: 39.6
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..37
e-value: 1.1E-10
score: 43.1
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204951contigH-elongata_contig204951:361..474 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204951.5842.1mRNA_H-elongata_contig204951.5842.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig204951 355..474 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig204951.5842.1 ID=prot_H-elongata_contig204951.5842.1|Name=mRNA_H-elongata_contig204951.5842.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MNITKENFEECFSTIRKAIKASHFIAVDAEFTGINRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf