prot_H-elongata_contig20492.5838.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20492.5838.1
Unique Nameprot_H-elongata_contig20492.5838.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length258
Homology
[Close]
BLAST of mRNA_H-elongata_contig20492.5838.1 vs. uniprot
Match: A0A6H5KV10_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV10_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 5.120e-63
Identity = 126/249 (50.60%), Postives = 149/249 (59.84%), Query Frame = 0 
Query:    5 DSLSLFPLVQPFAWAEMARMALCLHALREVGRDEKDLQPLILGGGMQPANNKDPKAMLTEADRKASAAIYFKSNITVKLLRMRLEHRWEVAATSKGLAASQSTAAVMAACIHTCPYTSAGALMARVYSPGEAWCGRGDWRFHLLSVTGWDPYTRHNKAAILANLRAAVEMISIAASITDTPDGSGLGSGEKRRRSHTADRKMNTHSKLVLALSRDGIKAREAAVEVSSMKQFGTLKTILENHPDQFPSP 253
            D L +  L  PFAWAEMAR AL LHALREVGRD+KDLQPL+LGGG+ P NNKDPKAMLTEADRK           TVKL+RMRLE R+E AA  KG +   + AA   A +HTCPY+SAGAL  RVY+PG+AWC RGDWRFHLLSVT  DPYT  +K AI+ NLRAAV ++  A          G    E+ +    A    N         S                + + TLK IL+  P++FP P
Sbjct:  279 DPLLIGALHGPFAWAEMARTALSLHALREVGRDDKDLQPLLLGGGVNPVNNKDPKAMLTEADRK-----------TVKLVRMRLEQRFEAAAARKGTSGPATPAAANVATVHTCPYSSAGALRTRVYTPGQAWCERGDWRFHLLSVTELDPYTPQDKTAIVRNLRAAVRLLDAATE--------GAPPNERMKDQRGASATKNQQK------SHXXXXXXXXXXXXXESRHYFTLKAILDRSPERFPPP 502
[Close]
BLAST of mRNA_H-elongata_contig20492.5838.1 vs. uniprot
Match: D7G219_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G219_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 1.510e-61
Identity = 125/249 (50.20%), Postives = 150/249 (60.24%), Query Frame = 0 
Query:    5 DSLSLFPLVQPFAWAEMARMALCLHALREVGRDEKDLQPLILGGGMQPANNKDPKAMLTEADRKASAAIYFKSNITVKLLRMRLEHRWEVAATSKGLAASQSTAAVMAACIHTCPYTSAGALMARVYSPGEAWCGRGDWRFHLLSVTGWDPYTRHNKAAILANLRAAVEMISIAASITDTPDGSGLGSGEKRRRSHTADRKMNTHSKLVLALSRDGIKAREAAVEVSSMKQFGTLKTILENHPDQFPSP 253
            D L +  L  PFAWAEMAR AL LHALREVGRD+KDLQPL+LGGG+ P NNKDPKAMLTEADRK           TVKL+RMRL+ R+E AA  +G +   + AA   A +HTCPY+SAGAL  RVY+PG+AWC RGDWRFHLLSVT  DPYT  +KAAI+ NLRAAV ++  A          G    EK +    A                      E+       + + TLK IL+  P++FP P
Sbjct:  312 DPLLIGALHGPFAWAEMARTALSLHALREVGRDDKDLQPLLLGGGVNPVNNKDPKAMLTEADRK-----------TVKLIRMRLDQRFEAAAARQGTSGPATPAAANVATVHTCPYSSAGALRTRVYTPGQAWCERGDWRFHLLSVTELDPYTPQDKAAIVRNLRAAVRLLDAATE--------GALPNEKMKDQGGASASXXXXXXXXXXXXXXXXXXXES-------RHYFTLKAILDRSPERFPPP 534
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20492.5838.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV10_9PHAE5.120e-6350.60Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G219_ECTSI1.510e-6150.20Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20492contigH-elongata_contig20492:3936..6532 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20492.5838.1mRNA_H-elongata_contig20492.5838.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20492 3936..6532 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20492.5838.1 ID=prot_H-elongata_contig20492.5838.1|Name=mRNA_H-elongata_contig20492.5838.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=258bp
IPSPDSLSLFPLVQPFAWAEMARMALCLHALREVGRDEKDLQPLILGGGM
QPANNKDPKAMLTEADRKASAAIYFKSNITVKLLRMRLEHRWEVAATSKG
LAASQSTAAVMAACIHTCPYTSAGALMARVYSPGEAWCGRGDWRFHLLSV
TGWDPYTRHNKAAILANLRAAVEMISIAASITDTPDGSGLGSGEKRRRSH
TADRKMNTHSKLVLALSRDGIKAREAAVEVSSMKQFGTLKTILENHPDQF
PSPTDDG*
back to top