prot_H-elongata_contig20487.5836.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20487.5836.1
Unique Nameprot_H-elongata_contig20487.5836.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length200
Homology
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BLAST of mRNA_H-elongata_contig20487.5836.1 vs. uniprot
Match: D8LJF0_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF0_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 4.010e-24
Identity = 81/150 (54.00%), Postives = 92/150 (61.33%), Query Frame = 0 
Query:    1 AHAASTLADVFPAEGGIEDSGCCGSGGNGNISFFGSSEDCEPSANIRGVNAIVKKFLEGPALERFAGGNGGFGSFSGSGISSNG----LRNSHAGTQQSGRRSTSSFATGGRRSSASVRFVEGGRKSSVGGWGEGDEAAKPGTSVCKDCL 146
            AHAASTLADVFP E  +ED+G                   +P+   RGV+AIV KFLEGPALERFA G  G                 LR S  GT   GRRST   A+G R S+ASVRFV+GGR+S+VGGWGEGDEAA+PG SVCKDCL
Sbjct:  779 AHAASTLADVFPDE--VEDTGXXX---XXXXXXXXXXXXXDPAT--RGVSAIVTKFLEGPALERFASGGVGXXXXXXXXXXXXXXXXILRKSSVGTL-GGRRST--LASGRRSSAASVRFVDGGRRSTVGGWGEGDEAARPGASVCKDCL 918
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BLAST of mRNA_H-elongata_contig20487.5836.1 vs. uniprot
Match: A0A6H5KM70_9PHAE (C2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM70_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.150e-5
Identity = 57/147 (38.78%), Postives = 62/147 (42.18%), Query Frame = 0 
Query:    1 AHAASTLADVFPAEGGIEDSGCCGSGGNGNISFFGSSEDCEPSANIRGVNAIVKKFLEGPALERFA-GGNGGFGSFSGSGISSNGLRNSHAGTQQSGRRSTSSFATGGRRSSASVRFVEGGRKSSVGGWGEGDEAAKPGTSVCKDCL 146
            AHAASTLADVFP E  +ED+G                +        RGV+AIV KFLEGPALERFA GG GG G                                        VRF             EGDEAA+PG SVCKDCL
Sbjct:  657 AHAASTLADVFPDE--VEDAGXXXXXXXXXXXXXXXGDPA-----TRGVSAIVTKFLEGPALERFASGGMGGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXVRFXXXXXXXXXXXXXEGDEAARPGASVCKDCL 794
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20487.5836.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJF0_ECTSI4.010e-2454.00C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KM70_9PHAE1.150e-538.78C2 domain-containing protein (Fragment) n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20487contigH-elongata_contig20487:3917..4960 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20487.5836.1mRNA_H-elongata_contig20487.5836.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20487 3807..4960 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20487.5836.1 ID=prot_H-elongata_contig20487.5836.1|Name=mRNA_H-elongata_contig20487.5836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
AHAASTLADVFPAEGGIEDSGCCGSGGNGNISFFGSSEDCEPSANIRGVN
AIVKKFLEGPALERFAGGNGGFGSFSGSGISSNGLRNSHAGTQQSGRRST
SSFATGGRRSSASVRFVEGGRKSSVGGWGEGDEAAKPGTSVCKDCLNSKV
DNGGRDPPALSNGPFRNAALGRGRVPRLPWRFRPANRQQLRHVRAVTRR*
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