mRNA_H-elongata_contig20487.5836.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20487.5836.1
Unique NamemRNA_H-elongata_contig20487.5836.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20487.5836.1 vs. uniprot
Match: D8LJF0_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF0_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.180e-23
Identity = 81/150 (54.00%), Postives = 92/150 (61.33%), Query Frame = 1 
Query:    1 AHAASTLADVFPAEGGIEDSGCCGSGGNGNISFFGSSEDCEPSANIRGVNAIVKKFLEGPALERFAGGNGGFGSFSGSGISSNG----LRNSHAGTQQSGRRSTSSFATGGRRSSASVRFVEGGRKSSVGGWGEGDEAAKPGTSVCKDCL 438
            AHAASTLADVFP E  +ED+G                   +P+   RGV+AIV KFLEGPALERFA G  G                 LR S  GT   GRRST   A+G R S+ASVRFV+GGR+S+VGGWGEGDEAA+PG SVCKDCL
Sbjct:  779 AHAASTLADVFPDE--VEDTGXXX---XXXXXXXXXXXXXDPAT--RGVSAIVTKFLEGPALERFASGGVGXXXXXXXXXXXXXXXXILRKSSVGTL-GGRRST--LASGRRSSAASVRFVDGGRRSTVGGWGEGDEAARPGASVCKDCL 918
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BLAST of mRNA_H-elongata_contig20487.5836.1 vs. uniprot
Match: A0A6H5KM70_9PHAE (C2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM70_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.240e-5
Identity = 57/147 (38.78%), Postives = 62/147 (42.18%), Query Frame = 1 
Query:    1 AHAASTLADVFPAEGGIEDSGCCGSGGNGNISFFGSSEDCEPSANIRGVNAIVKKFLEGPALERFA-GGNGGFGSFSGSGISSNGLRNSHAGTQQSGRRSTSSFATGGRRSSASVRFVEGGRKSSVGGWGEGDEAAKPGTSVCKDCL 438
            AHAASTLADVFP E  +ED+G                +        RGV+AIV KFLEGPALERFA GG GG G                                        VRF             EGDEAA+PG SVCKDCL
Sbjct:  657 AHAASTLADVFPDE--VEDAGXXXXXXXXXXXXXXXGDPA-----TRGVSAIVTKFLEGPALERFASGGMGGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXVRFXXXXXXXXXXXXXEGDEAARPGASVCKDCL 794
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20487.5836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJF0_ECTSI1.180e-2354.00C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KM70_9PHAE2.240e-538.78C2 domain-containing protein (Fragment) n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20487contigH-elongata_contig20487:3807..4960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog2880.D8LJF0
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
Ec32 ortholog descriptionC2 domain protein
Ec32 orthologEc-06_010050.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size712
Cds size600
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20487.5836.1prot_H-elongata_contig20487.5836.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20487 3917..4960 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930148.6144822-UTR-H-elongata_contig20487:3806..39161622930148.6144822-UTR-H-elongata_contig20487:3806..3916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20487 3807..3916 -
1691679299.5689344-UTR-H-elongata_contig20487:3806..39161691679299.5689344-UTR-H-elongata_contig20487:3806..3916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20487 3807..3916 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930148.6270247-CDS-H-elongata_contig20487:3916..40561622930148.6270247-CDS-H-elongata_contig20487:3916..4056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20487 3917..4056 -
1691679299.581422-CDS-H-elongata_contig20487:3916..40561691679299.581422-CDS-H-elongata_contig20487:3916..4056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20487 3917..4056 -
1622930148.6426218-CDS-H-elongata_contig20487:4456..44771622930148.6426218-CDS-H-elongata_contig20487:4456..4477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20487 4457..4477 -
1691679299.598005-CDS-H-elongata_contig20487:4456..44771691679299.598005-CDS-H-elongata_contig20487:4456..4477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20487 4457..4477 -
1622930148.654065-CDS-H-elongata_contig20487:4521..49601622930148.654065-CDS-H-elongata_contig20487:4521..4960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20487 4522..4960 -
1691679299.6062694-CDS-H-elongata_contig20487:4521..49601691679299.6062694-CDS-H-elongata_contig20487:4521..4960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20487 4522..4960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20487.5836.1

>prot_H-elongata_contig20487.5836.1 ID=prot_H-elongata_contig20487.5836.1|Name=mRNA_H-elongata_contig20487.5836.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=200bp
AHAASTLADVFPAEGGIEDSGCCGSGGNGNISFFGSSEDCEPSANIRGVN
AIVKKFLEGPALERFAGGNGGFGSFSGSGISSNGLRNSHAGTQQSGRRST
SSFATGGRRSSASVRFVEGGRKSSVGGWGEGDEAAKPGTSVCKDCLNSKV
DNGGRDPPALSNGPFRNAALGRGRVPRLPWRFRPANRQQLRHVRAVTRR*
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mRNA from alignment at H-elongata_contig20487:3807..4960-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20487.5836.1 ID=mRNA_H-elongata_contig20487.5836.1|Name=mRNA_H-elongata_contig20487.5836.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1154bp|location=Sequence derived from alignment at H-elongata_contig20487:3807..4960- (Himanthalia elongata Himel1 dioecious)
GCTCACGCTGCCAGCACGCTGGCGGACGTGTTCCCAGCAGAGGGAGGCAT
CGAAGATAGCGGTTGTTGCGGCAGCGGCGGCAACGGCAACATATCCTTTT
TTGGTTCTTCTGAGGATTGTGAGCCCTCCGCTAACATCAGAGGAGTGAAC
GCCATCGTGAAAAAGTTTTTGGAAGGCCCGGCGCTAGAGAGGTTTGCTGG
TGGCAACGGAGGATTTGGCAGTTTCAGCGGGAGCGGCATCAGCAGTAACG
GGCTGCGCAACAGTCACGCGGGAACGCAGCAGAGTGGGCGGCGGAGCACA
TCAAGCTTCGCCACGGGCGGGCGCAGGAGCAGCGCGAGCGTGAGATTCGT
GGAAGGCGGGAGGAAGAGCTCCGTGGGCGGGTGGGGAGAAGGAGATGAGG
CGGCGAAGCCAGGGACGTCCGTCTGCAAGGACTGTTTGAGCGACGTCGCT
AGCTTGCTGGCGGTGGCGCTGGCGCCAACGGAGACAGCAAGGTCGATAAT
GGAGGTGAGTTTTGTTTAACGTTGTCGGGGGTAAAGAAGGGAGCAACCGG
CGATGGGCGATGGATGGATGCTCACCGTATACAATTGGACGAAGACGATG
GATGAAAATTCGCGCGCCGGTGTTGGTTGGTGTAAGCTTGTTATAACATT
ATTGTCATTGCTGACGCGAGTTTTCTTTTTTCTTTTTTGAAAAAGATACT
GAACAGACTTTTTACGCGCACTTTTATTTTAATTTTTATACGGGCGTATA
TGATATCCTCGTGGAAATAGAGTTGTATACAATGAGCGTTCTTAATCAAA
AGCGGTGTAGGTGCATGACAATCGATGTCTAGATAAGCCTTTCCTGTTTA
CACTTTTTTTTCTTCTGCGCCCTACCTTCTTGCTCGTTTGCGCGTCGTCA
TCAGGACGCGACCCACCTGCGCTATCCAACGGTCCTTTCCGAAACGCCGC
CCTTGGCCGTGGCCGCGTTCCCCGCCTCCCGTGGCGGTTTCGGCCCGCTA
ACCGTCAGCAGTTACGCCACGTTCGAGCCGTTACGCGCCGCTGACTGGGC
TGAGCATGCCGCGCCAGTTCTGGTGGCACCAGTGGCGGAGGGAGCGACGG
CGGTGGCGGCTGCTGCAGGGGAAGTGTGGCACGCGGTCATACGGGATGCT
GCTG
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Coding sequence (CDS) from alignment at H-elongata_contig20487:3807..4960-

>mRNA_H-elongata_contig20487.5836.1 ID=mRNA_H-elongata_contig20487.5836.1|Name=mRNA_H-elongata_contig20487.5836.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at H-elongata_contig20487:3807..4960- (Himanthalia elongata Himel1 dioecious)
GCTCACGCTGCCAGCACGCTGGCGGACGTGTTCCCAGCAGAGGGAGGCAT
CGAAGATAGCGGTTGTTGCGGCAGCGGCGGCAACGGCAACATATCCTTTT
TTGGTTCTTCTGAGGATTGTGAGCCCTCCGCTAACATCAGAGGAGTGAAC
GCCATCGTGAAAAAGTTTTTGGAAGGCCCGGCGCTAGAGAGGTTTGCTGG
TGGCAACGGAGGATTTGGCAGTTTCAGCGGGAGCGGCATCAGCAGTAACG
GGCTGCGCAACAGTCACGCGGGAACGCAGCAGAGTGGGCGGCGGAGCACA
TCAAGCTTCGCCACGGGCGGGCGCAGGAGCAGCGCGAGCGTGAGATTCGT
GGAAGGCGGGAGGAAGAGCTCCGTGGGCGGGTGGGGAGAAGGAGATGAGG
CGGCGAAGCCAGGGACGTCCGTCTGCAAGGACTGTTTGAGCTCACGCTGC
CAGCACGCTGGCGGACGTGTTCCCAGCAGAGGGAGGCATCGAAGATAGCG
GTTGTTGCGGCAGCGGCGGCAACGGCAACATATCCTTTTTTGGTTCTTCT
GAGGATTGTGAGCCCTCCGCTAACATCAGAGGAGTGAACGCCATCGTGAA
AAAGTTTTTGGAAGGCCCGGCGCTAGAGAGGTTTGCTGGTGGCAACGGAG
GATTTGGCAGTTTCAGCGGGAGCGGCATCAGCAGTAACGGGCTGCGCAAC
AGTCACGCGGGAACGCAGCAGAGTGGGCGGCGGAGCACATCAAGCTTCGC
CACGGGCGGGCGCAGGAGCAGCGCGAGCGTGAGATTCGTGGAAGGCGGGA
GGAAGAGCTCCGTGGGCGGGTGGGGAGAAGGAGATGAGGCGGCGAAGCCA
GGGACGTCCGTCTGCAAGGACTGTTTGAACAGCAAGGTCGATAATGGAGA
CAGCAAGGTCGATAATGGAGGACGCGACCCACCTGCGCTATCCAACGGTC
CTTTCCGAAACGCCGCCCTTGGCCGTGGCCGCGTTCCCCGCCTCCCGTGG
CGGTTTCGGCCCGCTAACCGTCAGCAGTTACGCCACGTTCGAGCCGTTAC
GCGCCGCTGAGACGCGACCCACCTGCGCTATCCAACGGTCCTTTCCGAAA
CGCCGCCCTTGGCCGTGGCCGCGTTCCCCGCCTCCCGTGGCGGTTTCGGC
CCGCTAACCGTCAGCAGTTACGCCACGTTCGAGCCGTTACGCGCCGCTGA
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