prot_H-elongata_contig204630.5824.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig204630.5824.1
Unique Nameprot_H-elongata_contig204630.5824.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length129
Homology
[Close]
BLAST of mRNA_H-elongata_contig204630.5824.1 vs. uniprot
Match: A0A6J2YVB7_SITOR (uncharacterized protein LOC115890636 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YVB7_SITOR)

HSP 1 Score: 51.6 bits (122), Expect = 2.190e-5
Identity = 32/122 (26.23%), Postives = 59/122 (48.36%), Query Frame = 0 
Query:    1 RTAHQAWVLLITTCKGVAFDIVQRAEPPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGEYPRNFFLRMDQMVKELERVGRPVDLKDVDIVILSGLTPQYDTEVRMLESSSDWPTRDWI 122
            R   +A   +    K +A+  V+ A+   EAW  L + Y   GL  R  L      +++E       +      + ++L  + +PVD + + +++LSGLT +YD  V  +E+S+   T D++
Sbjct:   30 RCNEKALAKICLMIKPIAYTHVRLAKTAKEAWDNLQKAYEDQGLSRRLSLIRRLVRIRLENYSTMEAYVNETLSIAQKLADMAQPVDDEFLGVIMLSGLTSEYDPMVMAIENSNVKITSDFV 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204630.5824.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6J2YVB7_SITOR2.190e-526.23uncharacterized protein LOC115890636 n=1 Tax=Sitop... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 5..122
e-value: 7.9E-16
score: 58.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.647

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204630contigH-elongata_contig204630:620..1006 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204630.5824.1mRNA_H-elongata_contig204630.5824.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig204630 620..1006 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig204630.5824.1 ID=prot_H-elongata_contig204630.5824.1|Name=mRNA_H-elongata_contig204630.5824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
RTAHQAWVLLITTCKGVAFDIVQRAEPPGEAWSKLVQHYHASGLKERRRL
TVDFYTMKMELGEYPRNFFLRMDQMVKELERVGRPVDLKDVDIVILSGLT
PQYDTEVRMLESSSDWPTRDWIERAVINQ
back to top