prot_H-elongata_contig204581.5822.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig204581.5822.1
Unique Nameprot_H-elongata_contig204581.5822.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length50
Homology
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: D8LJI3_ECTSI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.400e-17
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 0
Query:   10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
            +ELVGTLRGFDDYVNMVLDDVTEYE DADGTKR++QLDQ+
Sbjct:   27 KELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQI 66          
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.490e-13
Identity = 30/40 (75.00%), Postives = 38/40 (95.00%), Query Frame = 0
Query:   10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
            +ELVGTLRGFDDYVNMVL+DVTEYE DA+G +R+V+L+Q+
Sbjct:   27 KELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQI 66          
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A067CXC5_SAPPC (U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC)

HSP 1 Score: 61.2 bits (147), Expect = 4.590e-11
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 0
Query:   10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
            +E VGTLRGFDDYVNMVLDDVTEYE   +G KRKV +DQV
Sbjct:   28 KEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQV 66          
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: H3G705_PHYRM (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G705_PHYRM)

HSP 1 Score: 60.5 bits (145), Expect = 5.390e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query:   10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
            +E +GTLRGFDDYVNMVLDDVTEYE   +G KR+V+LDQV
Sbjct:   19 KEFIGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 57          
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A7S4M2I3_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2I3_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 8.900e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query:   10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
            +E+VGTLRGFDDYVNMVL+DVTEYE  ADG KR  +LDQ+
Sbjct:   45 KEIVGTLRGFDDYVNMVLEDVTEYEITADG-KRTTKLDQI 83          
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A8J5M5U7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M5U7_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.650e-10
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query:   10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
            +E +GTLRGFDDYVNMVLDDVTEYE   +G KR+V+LDQV
Sbjct:   27 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 65          
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: R1CRE5_EMIHU (U6 snRNA-associated Sm-like protein LSm5 (Fragment) n=3 Tax=Eukaryota TaxID=2759 RepID=R1CRE5_EMIHU)

HSP 1 Score: 59.3 bits (142), Expect = 1.970e-10
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:   10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
            +ELVGTLRGFDDYVNMVLDDVTEYE   +G KR  +LDQ+
Sbjct:   20 KELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRVTKLDQI 58          
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: K3W4W8_GLOUD (U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD)

HSP 1 Score: 59.3 bits (142), Expect = 2.390e-10
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 0
Query:   10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
            +E +GTLRGFDDYVNMVLDDVTEYE   +G KR+++LDQV
Sbjct:   28 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQV 66          
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: W2LTZ1_PHYPR (U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=Phytophthora TaxID=4783 RepID=W2LTZ1_PHYPR)

HSP 1 Score: 59.7 bits (143), Expect = 2.840e-10
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0
Query:   10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
            +E +GTLRGFDDYVNMVLDDVTEYE   +G KR+V+LDQV
Sbjct:   50 KEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQV 88          
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Match: A0A024UWN5_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWN5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.650e-10
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0
Query:   10 QELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV 49
            +E VGTLRGFDDYVNMVLDDV EYE   +G KRKV++DQV
Sbjct:   29 KEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKVKVDQV 67          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204581.5822.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI3_ECTSI3.400e-1787.50U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=E... [more]
A0A835ZDD9_9STRA1.490e-1375.00U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
A0A067CXC5_SAPPC4.590e-1177.50U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=S... [more]
H3G705_PHYRM5.390e-1175.00U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
A0A7S4M2I3_9EUKA8.900e-1175.00U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
A0A8J5M5U7_9STRA1.650e-1075.00Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
R1CRE5_EMIHU1.970e-1075.00U6 snRNA-associated Sm-like protein LSm5 (Fragment... [more]
K3W4W8_GLOUD2.390e-1072.50U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=... [more]
W2LTZ1_PHYPR2.840e-1075.00U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=P... [more]
A0A024UWN5_9STRA3.650e-1075.00U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=A... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 11..45
e-value: 3.2E-10
score: 39.5
NoneNo IPR availableGENE3D2.30.30.100coord: 7..49
e-value: 1.2E-10
score: 42.8
IPR033871Sm-like protein LSm5PANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 10..49
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 11..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204581contigH-elongata_contig204581:277..426 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204581.5822.1mRNA_H-elongata_contig204581.5822.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig204581 277..426 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig204581.5822.1 ID=prot_H-elongata_contig204581.5822.1|Name=mRNA_H-elongata_contig204581.5822.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MHRPLSHPIQELVGTLRGFDDYVNMVLDDVTEYEADADGTKRKVQLDQV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR033871LSm5
IPR010920LSM_dom_sf