prot_H-elongata_contig203735.5795.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig203735.5795.1
Unique Nameprot_H-elongata_contig203735.5795.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length99
Homology
BLAST of mRNA_H-elongata_contig203735.5795.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.910e-22
Identity = 40/95 (42.11%), Postives = 67/95 (70.53%), Query Frame = 0
Query:    5 ITAVPRGRKIVGSRWVHSYKSDEFGNCVKTKSRMVAKGFTQMPNVDYHETTSPTPASAPVKIIAVAANELGLPVFHLDIYQAFVQAPLEEEIYMR 99
            +  +P GRK +GS+WV S+K++E G  V  K+RMVA+GF+++P +D+H ++S +P++A +K +   A E G  + H D+ QA++ A L+ EIY+R
Sbjct:   35 VKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKNEIYLR 129          
BLAST of mRNA_H-elongata_contig203735.5795.1 vs. uniprot
Match: A0A6H5L9H4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9H4_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.390e-21
Identity = 43/95 (45.26%), Postives = 66/95 (69.47%), Query Frame = 0
Query:    5 ITAVPRGRKIVGSRWVHSYKSDEFGNCVKTKSRMVAKGFTQMPNVDYHETTSPTPASAPVKIIAVAANELGLPVFHLDIYQAFVQAPLEEEIYMR 99
            +  +P GRK +GS+WV S+K++E G  V  K+RMVA+GF+Q P +D+H ++S  P++A +K +   A E G  + H D+ QAF+ A L+EEIY+R
Sbjct:  225 VKELPEGRKAIGSKWVFSWKTNEKGLIVDVKARMVARGFSQTPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAFIHAKLKEEIYLR 319          
BLAST of mRNA_H-elongata_contig203735.5795.1 vs. uniprot
Match: A0A6H5KPX2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.230e-21
Identity = 42/95 (44.21%), Postives = 66/95 (69.47%), Query Frame = 0
Query:    5 ITAVPRGRKIVGSRWVHSYKSDEFGNCVKTKSRMVAKGFTQMPNVDYHETTSPTPASAPVKIIAVAANELGLPVFHLDIYQAFVQAPLEEEIYMR 99
            +  +P GRK +GS+WV S+K++E G  V  K+RMVA+GF+Q+P +D+H ++S  P++A +K +   A E G  + H D+ QA+  A L+EEIY+R
Sbjct:  143 VKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYTHAKLKEEIYLR 237          
BLAST of mRNA_H-elongata_contig203735.5795.1 vs. uniprot
Match: A0A6H5JRB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB0_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 4.050e-21
Identity = 43/95 (45.26%), Postives = 67/95 (70.53%), Query Frame = 0
Query:    5 ITAVPRGRKIVGSRWVHSYKSDEFGNCVKTKSRMVAKGFTQMPNVDYHETTSPTPASAPVKIIAVAANELGLPVFHLDIYQAFVQAPLEEEIYMR 99
            +  +P GRK +GS+WV S+K+ E G  V  K+RMVA+GF+Q+P +D+H ++S  P++A +K +  AA E G  + H D+ QA++ A L+EEIY+R
Sbjct:  143 VKELPEGRKAIGSKWVLSWKTSEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAAATEKGKKLAHWDVKQAYIHAKLKEEIYLR 237          
BLAST of mRNA_H-elongata_contig203735.5795.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.530e-21
Identity = 42/95 (44.21%), Postives = 67/95 (70.53%), Query Frame = 0
Query:    5 ITAVPRGRKIVGSRWVHSYKSDEFGNCVKTKSRMVAKGFTQMPNVDYHETTSPTPASAPVKIIAVAANELGLPVFHLDIYQAFVQAPLEEEIYMR 99
            +  +P GRK +GS+WV S+K++E G  V  K+RMVA+GF+++P +D+H ++S  P++A +K +   A E G  + H D+ QA++ A LEEEIY+R
Sbjct:   51 VKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLEEEIYLR 145          
BLAST of mRNA_H-elongata_contig203735.5795.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.690e-21
Identity = 42/95 (44.21%), Postives = 67/95 (70.53%), Query Frame = 0
Query:    5 ITAVPRGRKIVGSRWVHSYKSDEFGNCVKTKSRMVAKGFTQMPNVDYHETTSPTPASAPVKIIAVAANELGLPVFHLDIYQAFVQAPLEEEIYMR 99
            +  +P GRK +GS+WV S+K++E G  V  K+RMVA+GF+Q+P +D+H ++S  P++A +K +   A E G  + H D+ QA++ A L+EEIY+R
Sbjct:  248 VKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLR 342          
BLAST of mRNA_H-elongata_contig203735.5795.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.690e-21
Identity = 42/95 (44.21%), Postives = 67/95 (70.53%), Query Frame = 0
Query:    5 ITAVPRGRKIVGSRWVHSYKSDEFGNCVKTKSRMVAKGFTQMPNVDYHETTSPTPASAPVKIIAVAANELGLPVFHLDIYQAFVQAPLEEEIYMR 99
            +  +P GRK +GS+WV S+K++E G  V  K+RMVA+GF+Q+P +D+H ++S  P++A +K +   A E G  + H D+ QA++ A L+EEIY+R
Sbjct:  493 VKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLR 587          
BLAST of mRNA_H-elongata_contig203735.5795.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.800e-21
Identity = 42/95 (44.21%), Postives = 67/95 (70.53%), Query Frame = 0
Query:    5 ITAVPRGRKIVGSRWVHSYKSDEFGNCVKTKSRMVAKGFTQMPNVDYHETTSPTPASAPVKIIAVAANELGLPVFHLDIYQAFVQAPLEEEIYMR 99
            +  +P GRK +GS+WV S+K++E G  V  K+RMVA+GF+Q+P +D+H ++S  P++A +K +   A E G  + H D+ QA++ A L+EEIY+R
Sbjct:  394 VKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLR 488          
BLAST of mRNA_H-elongata_contig203735.5795.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.800e-21
Identity = 42/95 (44.21%), Postives = 67/95 (70.53%), Query Frame = 0
Query:    5 ITAVPRGRKIVGSRWVHSYKSDEFGNCVKTKSRMVAKGFTQMPNVDYHETTSPTPASAPVKIIAVAANELGLPVFHLDIYQAFVQAPLEEEIYMR 99
            +  +P GRK +GS+WV S+K++E G  V  K+RMVA+GF+Q+P +D+H ++S  P++A +K +   A E G  + H D+ QA++ A L+EEIY+R
Sbjct:  535 VKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLR 629          
BLAST of mRNA_H-elongata_contig203735.5795.1 vs. uniprot
Match: A0A6H5JI89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI89_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.810e-21
Identity = 42/95 (44.21%), Postives = 67/95 (70.53%), Query Frame = 0
Query:    5 ITAVPRGRKIVGSRWVHSYKSDEFGNCVKTKSRMVAKGFTQMPNVDYHETTSPTPASAPVKIIAVAANELGLPVFHLDIYQAFVQAPLEEEIYMR 99
            +  +P GRK +GS+WV S+K++E G  V  K+RMVA+GF+Q+P +D+H ++S  P++A +K +   A E G  + H D+ QA++ A L+EEIY+R
Sbjct:  562 VKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLR 656          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203735.5795.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAZ3_9PHAE6.910e-2242.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L9H4_9PHAE1.390e-2145.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPX2_9PHAE2.230e-2144.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRB0_9PHAE4.050e-2145.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXE8_9PHAE4.530e-2144.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE5.690e-2144.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K3C5_9PHAE5.690e-2144.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE5.800e-2144.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE5.800e-2144.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI89_9PHAE5.810e-2144.21Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 5..99
e-value: 4.9E-23
score: 82.0
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 6..98
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 6..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203735contigH-elongata_contig203735:5..301 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203735.5795.1mRNA_H-elongata_contig203735.5795.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig203735 5..301 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig203735.5795.1 ID=prot_H-elongata_contig203735.5795.1|Name=mRNA_H-elongata_contig203735.5795.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MLIDITAVPRGRKIVGSRWVHSYKSDEFGNCVKTKSRMVAKGFTQMPNVD
YHETTSPTPASAPVKIIAVAANELGLPVFHLDIYQAFVQAPLEEEIYMR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like