prot_H-elongata_contig203286.5772.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig203286.5772.1
Unique Nameprot_H-elongata_contig203286.5772.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length89
Homology
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BLAST of mRNA_H-elongata_contig203286.5772.1 vs. uniprot
Match: D7G626_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G626_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 5.620e-44
Identity = 78/89 (87.64%), Postives = 84/89 (94.38%), Query Frame = 0 
Query:    1 MGDASDDEDMFPQVELPNTPDCTALTAVLRLYDHARLENKRTGVVSSRPGWGVEENIENWDGVYLDTDDRVVALDVDGDPENRQAVLIG 89
            MGD  DDE+ F +VELP+TPDC ALTAVLRLYDHARLENKRTGV+SSRPGWGV+ENIENWDGVYLDT+DRVVALDVDGDPENRQAVLIG
Sbjct:  358 MGD--DDEEEFVEVELPDTPDCKALTAVLRLYDHARLENKRTGVLSSRPGWGVDENIENWDGVYLDTEDRVVALDVDGDPENRQAVLIG 444
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203286.5772.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G626_ECTSI5.620e-4487.64Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203286contigH-elongata_contig203286:72..742 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203286.5772.1mRNA_H-elongata_contig203286.5772.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig203286 72..745 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig203286.5772.1 ID=prot_H-elongata_contig203286.5772.1|Name=mRNA_H-elongata_contig203286.5772.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MGDASDDEDMFPQVELPNTPDCTALTAVLRLYDHARLENKRTGVVSSRPG
WGVEENIENWDGVYLDTDDRVVALDVDGDPENRQAVLIG
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