prot_H-elongata_contig2028.5749.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig2028.5749.1
Unique Nameprot_H-elongata_contig2028.5749.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length213
Homology
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 8.000e-92
Identity = 163/212 (76.89%), Postives = 177/212 (83.49%), Query Frame = 0
Query:    1 SRFPSCKCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVLGMLGTAAGTMAEARESNEGHVGDMAAMNEEGVKLWSADEDYAYLAAERLADSVARD 212
            S  P  KCL+FAQHKA LDVTESALLR CF GV YLRMDGS SQA+RA  VDRFS DPSVAI+LLTTRVGHLGLNLSAASMV+FLEHDWNPQVDLQAMDRAHRLGQ+KAVNV+RLIAADSVEQRVLRLQGHKL VA+AVVS+EN+SAF+SGTGGVLGMLG A   +A                + E V+LWSADEDYAYLAAERLADSVAR+
Sbjct: 2124 SPLPGRKCLVFAQHKAALDVTESALLRPCFPGVKYLRMDGSVSQAERAAAVDRFSADPSVAILLLTTRVGHLGLNLSAASMVVFLEHDWNPQVDLQAMDRAHRLGQRKAVNVYRLIAADSVEQRVLRLQGHKLQVAAAVVSRENASAFSSGTGGVLGMLGEAMAVVAXXXXXXXXXXXX----DGESVELWSADEDYAYLAAERLADSVARE 2331          
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A0A835Z4M3_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4M3_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.670e-49
Identity = 104/203 (51.23%), Postives = 134/203 (66.01%), Query Frame = 0
Query:    7 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVLGMLGTAAGTMAEARESNEGHVGDMAAMNEEGVKLWSADEDYAYLAAERLADSV 209
            KCL+FAQHKA LD  E  LLR     V YLR+DGS  Q  RA V++RF++D +V+++LLTT VG LGLNL+ A  VIFLEH WNPQVDLQAMDRAHR+GQ++AVNV+RL+A  +VE+R+L LQ  KL  A  VV K+N+S ++  T  VL  L  AA   + A + +       AA  E  ++     ++YA   AER A SV
Sbjct:  383 KCLVFAQHKAALDAAEQCLLRQHLPSVKYLRIDGSIGQDARAAVLERFTSDAAVSLLLLTTAVGGLGLNLTVADTVIFLEHHWNPQVDLQAMDRAHRIGQRRAVNVYRLVATGTVEERILLLQAGKLATAEKVVGKDNASLWSLDTDSVL-QLFNAAIDASGAADGSXXXXXXXAAAEERQLQ-----DEYASFDAERFAVSV 579          
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A0A7S0S898_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0S898_9CHLO)

HSP 1 Score: 160 bits (405), Expect = 1.550e-46
Identity = 80/150 (53.33%), Postives = 109/150 (72.67%), Query Frame = 0
Query:    7 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVL 156
            + LIF Q K +LD+ E  +  +  RGV++LR+DGS     R +VV RF+ DPS+ ++LLTT VG LGLNL+ A  V+FLEHDWNPQ DLQAMDRAHRLGQ++ VNV+RL+   ++E++++ LQ  KL VA+AVV+ +N S  A  TG +L
Sbjct:    3 RVLIFCQLKGLLDLVEEEMFGSMLRGVSFLRLDGSVPPTQRFDVVRRFNADPSIDVLLLTTHVGGLGLNLTTADTVVFLEHDWNPQKDLQAMDRAHRLGQKRTVNVYRLLTKGTLEEKIMGLQRFKLDVANAVVNSDNMSLSAMDTGQML 152          
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A0A0B6ZWI8_9EUPU (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZWI8_9EUPU)

HSP 1 Score: 164 bits (414), Expect = 1.710e-46
Identity = 80/153 (52.29%), Postives = 110/153 (71.90%), Query Frame = 0
Query:    7 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVLGML 159
            + L+F Q KA+LD+ E  LL+ C   VT+LR+DGS     R ++V RF+ DPS+ I+LLTT VG LGLNL+ A  VIF+EHDWNP  DLQAMDRAHR+GQ+K VNV+RLI   ++E++++ LQ  K+ VA+ V+++ENSS    GT  +L + 
Sbjct:   63 RVLLFCQLKAMLDIVEKDLLKACMPNVTFLRLDGSVPTGSRHDIVHRFNNDPSIDILLLTTHVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMGLQKFKMAVANTVITQENSSLQTMGTDQLLDLF 215          
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A0A7S0Z8Q0_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0Z8Q0_9CHLO)

HSP 1 Score: 160 bits (405), Expect = 1.550e-45
Identity = 78/150 (52.00%), Postives = 114/150 (76.00%), Query Frame = 0
Query:    7 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVL 156
            + L+F+Q K++LD+ E+ L     R V++LR+DGS + + R EVV +F+ DPS+ ++LLTT VG LGLNL++A  V+FLEHDWNPQ DLQAMDRAHRLGQ++ VNV+R++   ++E++++ LQ  KL VA+AVV+ +N+S  A  TG +L
Sbjct:   33 RVLVFSQLKSLLDLVENELFSNSMRDVSWLRLDGSVAPSQRFEVVRKFNADPSIDVLLLTTHVGGLGLNLTSADTVVFLEHDWNPQKDLQAMDRAHRLGQRRTVNVYRILTRGTLEEKIMSLQRFKLDVANAVVNADNASMSAMDTGQML 182          
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: UPI00193A5E43 (LOW QUALITY PROTEIN: TATA-binding protein-associated factor 172-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A5E43)

HSP 1 Score: 170 bits (431), Expect = 3.280e-45
Identity = 82/153 (53.59%), Postives = 115/153 (75.16%), Query Frame = 0
Query:    7 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVLGML 159
            + LIF QHK++LD+ E  LLR   + VT++R+DGS   A+R ++V +F+ DPS+ ++LLTT+VG LGLNL+ A  VIF+EHDWNP VDLQAMDRAHR+GQ++ VNV+RLI   ++E+++L LQ  KL +A+ V+S ENSS  + GT  VL + 
Sbjct: 1624 RALIFCQHKSMLDIVEHDLLRKHMKSVTFMRLDGSVVAANRHQIVSKFNNDPSIDLLLLTTKVGGLGLNLTGADTVIFIEHDWNPTVDLQAMDRAHRIGQKRVVNVYRLITRATLEEKILGLQQFKLNIANTVISTENSSLHSMGTNQVLDLF 1776          
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A7SE45_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SE45_NEMVE)

HSP 1 Score: 158 bits (400), Expect = 3.940e-45
Identity = 76/147 (51.70%), Postives = 107/147 (72.79%), Query Frame = 0
Query:    7 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTG 153
            + L+F Q K++LD+ E+ L +T    VTYLR+DGS+    R  +V RF+ DPS+ ++LLTT VG LGLNL+ A  VIF+EHDWNP  DLQAMDRAHR+GQ+K VNV+RL+   ++E++++ LQ  KL +A+ V+S++NSS     TG
Sbjct:   29 RVLLFCQLKSMLDIVENDLFKTNMPSVTYLRLDGSTPAGSRHSIVHRFNNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLVTKGTLEEKIMGLQKFKLTIANTVISQDNSSLSTMDTG 175          
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A0A0B6ZWL7_9EUPU (Helicase C-terminal domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZWL7_9EUPU)

HSP 1 Score: 164 bits (414), Expect = 4.650e-45
Identity = 80/153 (52.29%), Postives = 110/153 (71.90%), Query Frame = 0
Query:    7 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVLGML 159
            + L+F Q KA+LD+ E  LL+ C   VT+LR+DGS     R ++V RF+ DPS+ I+LLTT VG LGLNL+ A  VIF+EHDWNP  DLQAMDRAHR+GQ+K VNV+RLI   ++E++++ LQ  K+ VA+ V+++ENSS    GT  +L + 
Sbjct:  202 RVLLFCQLKAMLDIVEKDLLKACMPNVTFLRLDGSVPTGSRHDIVHRFNNDPSIDILLLTTHVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRGTLEEKIMGLQKFKMAVANTVITQENSSLQTMGTDQLLDLF 354          
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: E2BIA8_HARSA (TATA-binding protein-associated factor 172 n=1 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BIA8_HARSA)

HSP 1 Score: 161 bits (407), Expect = 4.880e-45
Identity = 84/153 (54.90%), Postives = 108/153 (70.59%), Query Frame = 0
Query:    7 KCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFASGTGGVLGML 159
            + LIF Q KA+LD+ E  LLR     VTYLR+DGS   A R  VV RF+ DPS+ ++LLTT+VG LGLNL+ A  VIF+EHDWNP  DLQAMDRAHR+GQ+K VNV+RLI   +VE++++ LQ  KL  A+ V+S EN+S    GT  +L + 
Sbjct:  108 RALIFCQLKAMLDIVEKDLLRMHLPTVTYLRLDGSIPAAQRHSVVARFNADPSIDVLLLTTQVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRSTVEEKIMGLQKFKLLTANTVISTENASLDTMGTDQLLDLF 260          
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Match: A0A6H5J4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4R7_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 8.180e-45
Identity = 85/105 (80.95%), Postives = 88/105 (83.81%), Query Frame = 0
Query:    1 SRFPSCKCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEVVDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDRAHRLG 105
            S  P CKCLIFAQHKA LDVTESALLR CF GV YLRMDGS SQA+RA  VDRFS DPSVAI+LLTTRVGHLGLNLSAASMV+FLEHDWNPQVDLQ    A  LG
Sbjct: 1463 SPLPGCKCLIFAQHKAALDVTESALLRPCFPGVKYLRMDGSVSQAERAAAVDRFSADPSVAILLLTTRVGHLGLNLSAASMVVFLEHDWNPQVDLQVRGCAGVLG 1567          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2028.5749.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBB5_ECTSI8.000e-9276.89Essential abundant protein involved in regulation ... [more]
A0A835Z4M3_9STRA1.670e-4951.23SNF2 family N-terminal domain-containing protein n... [more]
A0A7S0S898_9CHLO1.550e-4653.33Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A0B6ZWI8_9EUPU1.710e-4652.29Helicase C-terminal domain-containing protein (Fra... [more]
A0A7S0Z8Q0_9CHLO1.550e-4552.00Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
UPI00193A5E433.280e-4553.59LOW QUALITY PROTEIN: TATA-binding protein-associat... [more]
A7SE45_NEMVE3.940e-4551.70Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
A0A0B6ZWL7_9EUPU4.650e-4552.29Helicase C-terminal domain-containing protein n=1 ... [more]
E2BIA8_HARSA4.880e-4554.90TATA-binding protein-associated factor 172 n=1 Tax... [more]
A0A6H5J4R7_9PHAE8.180e-4580.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 19..105
e-value: 3.1E-16
score: 69.9
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 7..105
e-value: 1.1E-14
score: 54.8
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 1..147
score: 14.079
NoneNo IPR availableGENE3D3.40.50.300coord: 3..200
e-value: 1.4E-54
score: 187.2
NoneNo IPR availablePANTHERPTHR10799SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATEDcoord: 7..161
NoneNo IPR availablePANTHERPTHR10799:SF814B-TFIID TATA-BOX-BINDING PROTEIN-ASSOCIATED FACTOR 1coord: 7..161
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2028contigH-elongata_contig2028:12782..13934 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2028.5749.1mRNA_H-elongata_contig2028.5749.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig2028 12782..13934 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig2028.5749.1 ID=prot_H-elongata_contig2028.5749.1|Name=mRNA_H-elongata_contig2028.5749.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp
SRFPSCKCLIFAQHKAVLDVTESALLRTCFRGVTYLRMDGSSSQADRAEV
VDRFSTDPSVAIMLLTTRVGHLGLNLSAASMVIFLEHDWNPQVDLQAMDR
AHRLGQQKAVNVFRLIAADSVEQRVLRLQGHKLGVASAVVSKENSSAFAS
GTGGVLGMLGTAAGTMAEARESNEGHVGDMAAMNEEGVKLWSADEDYAYL
AAERLADSVARD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase