prot_H-elongata_contig2027.5746.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig2027.5746.1
Unique Nameprot_H-elongata_contig2027.5746.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length529
Homology
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BLAST of mRNA_H-elongata_contig2027.5746.1 vs. uniprot
Match: A0A6H5JW94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW94_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.590e-5
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = 0 
Query:    1 MIDVANKRCASDGCVKRPSYGVAGCKKAEYCALHASKDM 39
            M +V +KRC   GC K+PS+G AG K+AE+C  HA +DM
Sbjct:    1 MFNVVDKRCGHPGCTKKPSFGTAGSKRAEFCCPHAKQDM 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2027.5746.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JW94_9PHAE4.590e-553.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2027contigH-elongata_contig2027:7511..9097 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2027.5746.1mRNA_H-elongata_contig2027.5746.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig2027 7430..9287 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig2027.5746.1 ID=prot_H-elongata_contig2027.5746.1|Name=mRNA_H-elongata_contig2027.5746.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=529bp
MIDVANKRCASDGCVKRPSYGVAGCKKAEYCALHASKDMIDVASKRCAKD
GCFKRPTYGVVGKKAEFCVVHALEGMINVQSMMCANYGCVKRPSYGLAGS
KKAEFCSAHALEGMINVQSMGCANYGCVKRPSYGPAGSNKAEYCAVHALE
GMVNVARKNPSYSVAGSKQAEYCGVHSLEGIINISNTRRASDGCLKLPSY
GVAGSIKAEYCAVYSLGGMIDVASKRCAKDRCFNHPSYGLAGRTKAVSCA
VNALERMITTQKKGCASDEGVKHPSYGVAGSKEAEYCGMHALEGMIDVAR
KKCCDRYIKRPSYAMADSKKTKNCDVHAWEWKIDVGSKSYSSDGSCMSLG
DGVVGSETPESYVADDPKRMADVAYTWCASNGCCKRPRYGPVCRIKPEYC
SEDAVNGMGTVGKLNSGGGCHTEKMSLVDDHDFIDSRNRCFGNGCWRSAN
DDVAGSAGQEYCAEIVAEGVEFSNAQKPSRTRKRIPETTGPGVCVLQREI
ITSFKHSCHNAEVSDPKGVKIDVSLSLP*
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