prot_H-elongata_contig2026.5742.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig2026.5742.1
Unique Nameprot_H-elongata_contig2026.5742.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length179
Homology
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BLAST of mRNA_H-elongata_contig2026.5742.1 vs. uniprot
Match: A0A6H5KN98_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 2.500e-53
Identity = 96/163 (58.90%), Postives = 120/163 (73.62%), Query Frame = 0 
Query:   15 TGSAIDKKRDAREANRIHCRQTRERNREKERLLKEEVEVLSLYKAIVEDGPDLFSCHHVELDAPFSFLCENYYTRLQVAPEEVLGQPLASIVDPRDVYQLRAAVSQIL-NQNSGGXXXXXXXGGVGTSGTMVHLRVVCGGLTFPASMTMVIGSQGMIVVTRLY 176
            T  A D ++  R ANRIHCR+TRER R  E LLKEEVE+LSLYKA+VE+GPDLFSCH VE DAPFSF CENY+ +LQ+APE+ +G+PLASIVDP D   L  A++++L N+ + G            SG +V LRV CG ++  ASM+MVIGSQG++VVTRLY
Sbjct:   10 TRGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTNIGDSEPG-------SGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLY 165
[Close]
BLAST of mRNA_H-elongata_contig2026.5742.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 4.250e-39
Identity = 85/175 (48.57%), Postives = 117/175 (66.86%), Query Frame = 0 
Query:    3 ERTGRFPTKRRGTGSAIDKKRDAREANRIHCRQTRERNREKERLLKEEVEVLSLYKAIVEDGPDLFSCHHVELDAPFSFLCENYYTRLQVAPEEVLGQPLASIVDPRDVYQLRAAVSQILNQNSGGXXXXXXXGGVGTSGTMVHLRVVCGGLTFPASMTMVIGSQGMIVVTRLYD 177
            ER+     + RG     D++  +REANRIHC++TR+R RE+ER L E VE+L L ++IVE GPDLFS H+  +DAPFS+LC+N+  RLQ+ PE ++G+ L SIVD R+   LR A+ Q+LN+     XXXXXX        +VH+R+  G +   ASM++  GS G+IVVTRLY 
Sbjct:    5 ERSNSGNGRARGASQKSDER--SREANRIHCKETRDRRRERERALSEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQ--HXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLIVVTRLYS 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2026.5742.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KN98_9PHAE2.500e-5358.90PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRF4_9PHAE4.250e-3948.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 149..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2026contigH-elongata_contig2026:8408..11023 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2026.5742.1mRNA_H-elongata_contig2026.5742.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig2026 7927..12308 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig2026.5742.1 ID=prot_H-elongata_contig2026.5742.1|Name=mRNA_H-elongata_contig2026.5742.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
MDERTGRFPTKRRGTGSAIDKKRDAREANRIHCRQTRERNREKERLLKEE
VEVLSLYKAIVEDGPDLFSCHHVELDAPFSFLCENYYTRLQVAPEEVLGQ
PLASIVDPRDVYQLRAAVSQILNQNSGGGGGGGSAGGVGTSGTMVHLRVV
CGGLTFPASMTMVIGSQGMIVVTRLYDV*
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