prot_H-elongata_contig20257.5738.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20257.5738.1
Unique Nameprot_H-elongata_contig20257.5738.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length246
Homology
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BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Match: A0A6H5KBT7_9PHAE (EGF-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT7_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 3.940e-51
Identity = 106/227 (46.70%), Postives = 141/227 (62.11%), Query Frame = 0 
Query:   27 ALDAQTAAFSNLMRADIAQSLGVSLDAVMLAGVSPAGEADADWRAWRRWAEGKLNVSLVIKSEEPSVTGNRLMSAWNDAGSRLHVGAMSGFIDFAQGAKVN--ILSQHLTQANPTTSHDDIGGMAFLAIFLYIACVAVAIPACSMSRSCCSRRKRNSLAVTNGAERAGVG-----IFRSGWRFPLGIWGERAGGRDEGSDDYHQEMTPLTEG-AENAERAERERSKV 245
            ALD Q AAFS L+R+D+ Q+LGVS++ V + GV+PAGE   DW  W +W  G LNVS+V+ S+ P  TG RL+SAWN+  SRLH G ++G IDF++GAKV   +LS         T+ +D  G   LA FLY+ C A+AIPAC +SR  CSRR++ +   +N    A  G     + R GWR P    G R GG  EG+D   QE+ PL  G  + AER+ RER++V
Sbjct:  328 ALDEQGAAFSALLRSDVGQALGVSMNVVEVGGVTPAGETLVDWGTWEQWGTGALNVSVVVDSDAPEETGRRLLSAWNEPSSRLHAGTITGLIDFSRGAKVTAVVLSTAAFSRKGGTAANDFNGPTLLATFLYVMCFALAIPACGVSRRFCSRRRQGNSFSSNAGSSASSGARSDGVKRRGWRSPRRTGGPRGGGV-EGAD--LQEIVPLAAGEGDGAERSRRERTRV 551
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BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Match: D8LQG6_ECTSI (Carboxypeptidase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG6_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.520e-41
Identity = 92/190 (48.42%), Postives = 121/190 (63.68%), Query Frame = 0 
Query:    1 MLPPKGIADAADTSENPLPGIANDKGALDAQTAAFSNLMRADIAQSLGVSLDAVMLAGVSPAGEADADWRAWRRWAEGKLNVSLVIKSEEPSVTGNRLMSAWNDAGSRLHVGAMSGFIDFAQGAKVN--ILSQHLTQANPTTSHDDIGGMAFLAIFLYIACVAVAIPACSMSRSCCSRRKR-NSLAVTNG 187
            +LPP G A+  DT   P   IA    ALD Q +AFS L+R+D+ Q+LGVS++ V + GV+PAGE   DW AW +W  G LNVS+V+ S+ P  TG RL+SAWN+  SRLH G ++G IDF++GA+V   +LS         T+  D  G   LA FLY+ C A+AIPAC MSR   SRR+R NS + + G
Sbjct:  784 VLPPDGNAENGDTI--PSSSIA----ALDEQGSAFSALLRSDVGQALGVSMNVVEVGGVTPAGETLVDWGAWEQWGTGALNVSVVVDSDAPEETGRRLLSAWNEPSSRLHSGTITGLIDFSRGAEVTAVVLSTAAFSRKGGTAAADFKGPTLLATFLYVVCFALAIPACGMSRRFFSRRRRGNSFSSSAG 967
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20257.5738.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBT7_9PHAE3.940e-5146.70EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
D8LQG6_ECTSI1.520e-4148.42Carboxypeptidase (Partial) (Fragment) n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 228..245
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 170..245
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 145..169
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..144
NoneNo IPR availableTMHMMTMhelixcoord: 148..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20257contigH-elongata_contig20257:2601..4534 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20257.5738.1mRNA_H-elongata_contig20257.5738.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20257 271..5329 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20257.5738.1 ID=prot_H-elongata_contig20257.5738.1|Name=mRNA_H-elongata_contig20257.5738.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=246bp
MLPPKGIADAADTSENPLPGIANDKGALDAQTAAFSNLMRADIAQSLGVS
LDAVMLAGVSPAGEADADWRAWRRWAEGKLNVSLVIKSEEPSVTGNRLMS
AWNDAGSRLHVGAMSGFIDFAQGAKVNILSQHLTQANPTTSHDDIGGMAF
LAIFLYIACVAVAIPACSMSRSCCSRRKRNSLAVTNGAERAGVGIFRSGW
RFPLGIWGERAGGRDEGSDDYHQEMTPLTEGAENAERAERERSKV*
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