prot_H-elongata_contig20204.5717.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20204.5717.1
Unique Nameprot_H-elongata_contig20204.5717.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length169
Homology
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BLAST of mRNA_H-elongata_contig20204.5717.1 vs. uniprot
Match: D7G646_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G646_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.980e-31
Identity = 96/199 (48.24%), Postives = 104/199 (52.26%), Query Frame = 0 
Query:    1 DGGRGAVTCAALVHELPAFLAAAVEAVGSLRTLAASQVVSRAWRRSLG-GDRGGA-MFGSIVRLVGVSAALRPAVWQQLVLRAVS---------------------------------VDSSGGGESFYLPCLSVVGSSLAKGETPTVAVGAVAACCSFADLVEAGRVGPHAALIARDVPRAFGAVAPHKRRDHDGGCR 164
            DGGR       L  ELPAFLA AV   GSLR LAA Q VSRAWR +LG GD  G  +FG IVR  GV A+LRPAVWQ LV RAV+                                   S GG ESF         SS +   +P+          SFA LVE GR GPHAALIARDVPRAFGAVAPHKRR+   G R
Sbjct: 1372 DGGR-VCDLEPLARELPAFLARAVGLSGSLRALAACQAVSRAWRDALGFGDESGKELFGGIVRSSGVPASLRPAVWQMLVQRAVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIGGRESF---------SSCSFSSSPS----------SFAQLVEIGRAGPHAALIARDVPRAFGAVAPHKRRESGDGSR 1550
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BLAST of mRNA_H-elongata_contig20204.5717.1 vs. uniprot
Match: A0A6H5JL00_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL00_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.030e-30
Identity = 87/180 (48.33%), Postives = 99/180 (55.00%), Query Frame = 0 
Query:    1 DGGRGAVTCAALVHELPAFLAAAVEAVGSLRTLAASQVVSRAWRRSLG--GDRGGAMFGSIVRLVGVSAALRPAVWQQLVLRAVSVDSSGGGESFYLPCLSVVGSSLAKGETPTVAV---GAVAACC------SFADLVEAGRVGPHAALIARDVPRAFGAVAPHKRRDHDGGCRGRVVP 169
            DGGR       L  ELPAFL  AV   GSLR LAA Q VSRAWR +LG   +RG  +FG IVR  GV A+LRPAVWQ LV RAV+                              ++    + ++C       SFA LVE GR GPHAALIARDVPRAFGAVAPHKRR+   G R  + P
Sbjct: 1631 DGGR-ICDLEPLARELPAFLTRAVGLSGSLRALAACQAVSRAWRDALGFGEERGKDLFGGIVRSSGVPASLRPAVWQMLVQRAVAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSICGRDSFSSCSFSSSLSSFAQLVEIGRAGPHAALIARDVPRAFGAVAPHKRRESGDGSRSTITP 1809
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20204.5717.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G646_ECTSI2.980e-3148.24Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JL00_9PHAE1.030e-3048.33Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20204contigH-elongata_contig20204:1067..2086 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20204.5717.1mRNA_H-elongata_contig20204.5717.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20204 1067..2086 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20204.5717.1 ID=prot_H-elongata_contig20204.5717.1|Name=mRNA_H-elongata_contig20204.5717.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
DGGRGAVTCAALVHELPAFLAAAVEAVGSLRTLAASQVVSRAWRRSLGGD
RGGAMFGSIVRLVGVSAALRPAVWQQLVLRAVSVDSSGGGESFYLPCLSV
VGSSLAKGETPTVAVGAVAACCSFADLVEAGRVGPHAALIARDVPRAFGA
VAPHKRRDHDGGCRGRVVP
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