prot_H-elongata_contig201986.5714.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig201986.5714.1
Unique Nameprot_H-elongata_contig201986.5714.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length159
Homology
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3GCN4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GCN4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.860e-25
Identity = 71/166 (42.77%), Postives = 99/166 (59.64%), Query Frame = 0
Query:    1 MGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 159
            MG  R+ +G     + + R + I Q  Y ESI++K   +  K    P   GV  L+KADEP+  +++ +M+  PYR  VG+LM+ A  TR DI+ AV  ++RF ENPG     A +K++ YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML
Sbjct:   75 MGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPYLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVHYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLML 238          
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3V7V5_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3V7V5_9STRA)

HSP 1 Score: 107 bits (267), Expect = 5.490e-25
Identity = 70/165 (42.42%), Postives = 99/165 (60.00%), Query Frame = 0
Query:    1 MGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEEQMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 159
            +G  R+ +G     + + R + I Q  Y ESI++K   +  K    P   GV  L+KADEP+  +E +M+  PYR  VG+LM+ A  TR DI+ AV  ++RF ENPG     A +K+++YLL TKD GI Y G   G  +EAY+++D+    D RRSVSG +LML
Sbjct:  138 LGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGRENAKPCLTPLEPGV-NLTKADEPQT-EEAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSNADWAGNRDDRRSVSGMLLML 299          
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6G0QQ26_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=20 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ26_9STRA)

HSP 1 Score: 110 bits (274), Expect = 5.500e-25
Identity = 71/166 (42.77%), Postives = 101/166 (60.84%), Query Frame = 0
Query:    1 MGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 159
            MG  R+ +G     N + R + I Q  Y ESI++K+  +  K    P   GV  L+KADEP+  +++ +M+  PYR  VG+LM+ +  TR DI+ AV  ++RF ENPG     A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML
Sbjct:  608 MGRARFILGIEIDYNMERRTLGISQKAYTESIIKKVGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLML 771          
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3GI70_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A3GI70_9STRA)

HSP 1 Score: 107 bits (266), Expect = 6.240e-25
Identity = 70/166 (42.17%), Postives = 99/166 (59.64%), Query Frame = 0
Query:    1 MGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 159
            MG  R+ +G     + + R + I    Y ESI++K   +  K    P   GV  L+KADEP+  +++ +M+  PYR  VG+LM+ A  TR DI+ AV  ++RF ENPG     A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML
Sbjct:   27 MGRARFILGIEIDYDMERRTLGISHKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLML 190          
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3PU23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PU23_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.090e-24
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 0
Query:   15 REVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 159
            R + I Q  Y ESI++K   +  K    P   GV  L+KADEP+  +++ +M+  PYR  VG+LM+ A  TR DI+ AV  ++RF ENPG     A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D R SVSG +LML
Sbjct:    4 RTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRHSVSGTLLML 149          
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3SPB0_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SPB0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.630e-24
Identity = 67/148 (45.27%), Postives = 92/148 (62.16%), Query Frame = 0
Query:   15 REVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 159
            R + I Q  Y ESI++K   +  K    P   GV  L+KADEP+  +++ +M+  PYR  VG+LM+ A  TR DI+ AV  ++RF ENPG     A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML
Sbjct:    4 RTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-RLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLML 149          
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3J149_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3J149_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.630e-24
Identity = 67/148 (45.27%), Postives = 92/148 (62.16%), Query Frame = 0
Query:   15 REVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 159
            R + I Q  Y ESI++K   +  K    P   GV  L+KADEP+  +++ +M+  PYR  VG+LM+ A  TR DI+ AV  ++RF ENPG     A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML
Sbjct:    4 RTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-RLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLML 149          
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.860e-24
Identity = 70/166 (42.17%), Postives = 100/166 (60.24%), Query Frame = 0
Query:    1 MGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 159
            MG  R+ +G     + + R + I Q  Y ESI++K   +  K    P   GV  L+KADEP+  +++ +M+  PYR  VG+LM+ A  TR DI+ AV  ++RF ENPG     A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LM+
Sbjct:  107 MGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLMM 270          
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3HKQ8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3HKQ8_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.970e-24
Identity = 70/166 (42.17%), Postives = 99/166 (59.64%), Query Frame = 0
Query:    1 MGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPK-EEQMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 159
            +G  R+ +G     + + R + I Q  Y ESI++K   +  K    P   GV  L+KADEP+  + + +M+  PYR  VG+LM+ A  TR DI+ AV  ++RF ENPG     A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML
Sbjct:  138 LGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEVKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNRDDRRSVSGMLLML 301          
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.280e-24
Identity = 70/166 (42.17%), Postives = 100/166 (60.24%), Query Frame = 0
Query:    1 MGDTRYYMGC----NRKAREVKIGQHLYVESIVEKL--DIKKESKIPATSGVPTLSKADEPRNPKEE-QMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENPGPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRRSVSGAVLML 159
            MG  R+ +G     + + R + I Q  Y ESI++K   +  K    P   GV  L+KADEP+  +++ +M+  PYR  VG+LM+ +  TR DI+ AV  ++RF ENPG     A +K+++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LML
Sbjct:  364 MGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLML 527          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201986.5714.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3GCN4_9STRA2.860e-2542.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3V7V5_9STRA5.490e-2542.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0QQ26_9STRA5.500e-2542.77Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3GI70_9STRA6.240e-2542.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3PU23_9STRA1.090e-2444.59Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6A3SPB0_9STRA1.630e-2445.27Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A6A3J149_9STRA1.630e-2445.27Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A4F359_9STRA1.860e-2442.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3HKQ8_9STRA1.970e-2442.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3DSS8_9STRA3.280e-2442.17Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201986contigH-elongata_contig201986:616..1092 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201986.5714.1mRNA_H-elongata_contig201986.5714.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig201986 598..1092 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig201986.5714.1 ID=prot_H-elongata_contig201986.5714.1|Name=mRNA_H-elongata_contig201986.5714.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
MGDTRYYMGCNRKAREVKIGQHLYVESIVEKLDIKKESKIPATSGVPTLS
KADEPRNPKEEQMRKFPYREAVGALMWTATMTRSDIASAVRVVARFCENP
GPARKKAVMKIMQYLLHTKDWGITYGGQDCGLCMEAYTDSDFGACLDTRR
SVSGAVLML
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