prot_H-elongata_contig201840.5707.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig201840.5707.1
Unique Nameprot_H-elongata_contig201840.5707.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length37
Homology
BLAST of mRNA_H-elongata_contig201840.5707.1 vs. uniprot
Match: D8LMA5_ECTSI (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA5_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.300e-11
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0
Query:    1 ELYDLINRDYADFILVSTKLSGVGGRVADLRDPVAR 36
            ELYDLINRDYADFILVSTKLSGVG +V+ LR+P+AR
Sbjct:   55 ELYDLINRDYADFILVSTKLSGVGSKVSHLREPMAR 90          
BLAST of mRNA_H-elongata_contig201840.5707.1 vs. uniprot
Match: A0A6H5JYJ6_9PHAE (Conserved oligomeric Golgi complex subunit 2 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 5.330e-11
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 0
Query:    1 ELYDLINRDYADFILVSTKLSGVGGRVADLRDPVAR 36
            ELYDLINRDYADFILVSTKLSGVG +V+ LR+P+AR
Sbjct:   54 ELYDLINRDYADFILVSTKLSGVGSKVSHLREPMAR 89          
BLAST of mRNA_H-elongata_contig201840.5707.1 vs. uniprot
Match: A0A835ZA59_9STRA (Conserved oligomeric Golgi complex subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA59_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.800e-7
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0
Query:    2 LYDLINRDYADFILVSTKLSGVGGRVADLRDPV 34
            LY+LINRDYADFILVSTKLSGV  +V+DL  P+
Sbjct:   76 LYELINRDYADFILVSTKLSGVENKVSDLATPI 108          
BLAST of mRNA_H-elongata_contig201840.5707.1 vs. uniprot
Match: A0A6I9RSL1_ELAGV (Conserved oligomeric Golgi complex subunit 2 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RSL1_ELAGV)

HSP 1 Score: 48.5 bits (114), Expect = 1.980e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    1 ELYDLINRDYADFILVSTKLSGVGGRVADLRDPVARY 37
            EL DLINRDYADF+ +ST+L  V   VA +RDP+A +
Sbjct:   67 ELVDLINRDYADFVSLSTRLVDVDSAVARMRDPLAEF 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201840.5707.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LMA5_ECTSI5.300e-1183.33Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A6H5JYJ6_9PHAE5.330e-1183.33Conserved oligomeric Golgi complex subunit 2 (Frag... [more]
A0A835ZA59_9STRA1.800e-775.76Conserved oligomeric Golgi complex subunit 2 n=1 T... [more]
A0A6I9RSL1_ELAGV1.980e-559.46Conserved oligomeric Golgi complex subunit 2 n=4 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024602Conserved oligomeric Golgi complex, subunit 2, N-terminalPFAMPF06148COG2coord: 1..36
e-value: 2.2E-6
score: 27.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201840contigH-elongata_contig201840:676..786 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201840.5707.1mRNA_H-elongata_contig201840.5707.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig201840 676..786 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig201840.5707.1 ID=prot_H-elongata_contig201840.5707.1|Name=mRNA_H-elongata_contig201840.5707.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
ELYDLINRDYADFILVSTKLSGVGGRVADLRDPVARY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024602COG_su2_N