prot_H-elongata_contig20158.5689.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20158.5689.1
Unique Nameprot_H-elongata_contig20158.5689.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length139
Homology
BLAST of mRNA_H-elongata_contig20158.5689.1 vs. uniprot
Match: D7FN61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN61_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 6.490e-39
Identity = 79/150 (52.67%), Postives = 95/150 (63.33%), Query Frame = 0
Query:   12 GRDGRFWEIDLPAFIERCLTSSFTDLRALPHINNLFMVMLEVIAKRLQDPAPMPRHLLQTLSRLGHNDRRCEWYYNNYGRSSSTSYEAAVAAVED---------------------GVATE-FVVAETKSEWDQTYVQPPRGSIRSSFYS 139
            G + R WE+DLPAFIERCL+SS  DL+ALP IN+LF ++LE+IA RL  PAPMPRHLLQT+SRLGH DRRC WYY +YGRSS T    A++                         GV+ E F+  E K EWD+ YVQ  RG IR+ F S
Sbjct:  365 GPEARLWEMDLPAFIERCLSSSINDLQALPFINDLFKLVLEIIAVRLWKPAPMPRHLLQTMSRLGHGDRRCTWYYASYGRSSGTHDGPALSPXXXXXXXXXXXXXXXXXXXXXXXXGVSEEEFLFVERKPEWDKVYVQQTRGGIRAGFQS 514          
BLAST of mRNA_H-elongata_contig20158.5689.1 vs. uniprot
Match: A0A7S1UK73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK73_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.820e-9
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 0
Query:   12 GRDGRFWEIDLPAFIERCLTSSFTDLRALPHINNLFMVMLEVIAKRLQD-PAPMPRHLLQTLSRLGHNDRRCEWYYNNYGR 91
            G  G FW +DLP F+E C+TS+F D   LP + +    +++VI   ++D   P+   +LQ   RL   D+ C ++YN Y R
Sbjct:   16 GSPGSFWVVDLPNFVEACMTSNFEDPGVLPLVLDALRYVMDVILDNIEDIDRPVMPEILQQFHRLSGVDQHCNYFYNRYAR 96          
BLAST of mRNA_H-elongata_contig20158.5689.1 vs. uniprot
Match: A0A7R9U6L2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6L2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 6.860e-7
Identity = 32/110 (29.09%), Postives = 55/110 (50.00%), Query Frame = 0
Query:    2 VTVRAAKKGEGRDG-RFWEIDLPAFIERCLTSSFTDLRALPHINNLFMVMLEVIAKRLQDPA-PMPRHLLQTLSRLGHNDRRCEWYYNNYGRSSSTSYEAAVAAVEDGVA 109
            V   A   G+ + G RFW +DLP F+E C+TS + D   LP + +    +++V+   + +   P+   +LQ   RL   D+ C ++Y+ Y +    S    V   +D +A
Sbjct:   28 VAHDARSSGQEQGGSRFWVVDLPHFVEACMTSQYEDPSVLPIVMDFLRYLMDVVVDNIGNTQRPVMPEILQQFHRLCGVDQHCAYFYDRYSKGHIDSIAEYVDEPQDYLA 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20158.5689.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FN61_ECTSI6.490e-3952.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UK73_9STRA2.820e-937.04Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9U6L2_9STRA6.860e-729.09Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20158contigH-elongata_contig20158:3952..4849 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20158.5689.1mRNA_H-elongata_contig20158.5689.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20158 1975..4849 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20158.5689.1 ID=prot_H-elongata_contig20158.5689.1|Name=mRNA_H-elongata_contig20158.5689.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MVTVRAAKKGEGRDGRFWEIDLPAFIERCLTSSFTDLRALPHINNLFMVM
LEVIAKRLQDPAPMPRHLLQTLSRLGHNDRRCEWYYNNYGRSSSTSYEAA
VAAVEDGVATEFVVAETKSEWDQTYVQPPRGSIRSSFYS
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