mRNA_H-elongata_contig20158.5689.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20158.5689.1
Unique NamemRNA_H-elongata_contig20158.5689.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20158.5689.1 vs. uniprot
Match: D7FN61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN61_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 6.320e-86
Identity = 151/276 (54.71%), Postives = 181/276 (65.58%), Query Frame = 3 
Query:  210 DDSLSWSSHSLKVGDLLDARDTFGNWCVAQVVKKEGECLRVHFQGLHSRFDEDIRLESSKLAKLGTNTSGRDTGQPARRPGAPWNIAPAQVRAVRDNVVEMV--TVRAAKKGEGR-------------DGRFWEIDLPAFIERCLTSSFTDLRALPHINNLFMVMLEVIAKRLQDPAPMPRHLLQTLSRLGHNDRRCEWYYNNYGRSSSTSYEAAVAAVED---------------------GVATE-FVVAETKSEWDQTYVQPPRGSIRSSFYS 926
            ++ LSWS+HSL VGD LDARD+ G WCVAQVV+ EGE +RVHFQG HSR+DEDIR+ES KLAKLGT+TSGRDTGQ  RRPGAPW I P +VR V   V  ++   +R  + G G              + R WE+DLPAFIERCL+SS  DL+ALP IN+LF ++LE+IA RL  PAPMPRHLLQT+SRLGH DRRC WYY +YGRSS T    A++                         GV+ E F+  E K EWD+ YVQ  RG IR+ F S
Sbjct:  239 EEPLSWSAHSLTVGDWLDARDSDGTWCVAQVVRIEGESMRVHFQGYHSRYDEDIRVESLKLAKLGTHTSGRDTGQSTRRPGAPWGITPNEVRDVIRRVKGLLPEVLREGEVGSGDXXXXXXXXXQHGPEARLWEMDLPAFIERCLSSSINDLQALPFINDLFKLVLEIIAVRLWKPAPMPRHLLQTMSRLGHGDRRCTWYYASYGRSSGTHDGPALSPXXXXXXXXXXXXXXXXXXXXXXXXGVSEEEFLFVERKPEWDKVYVQQTRGGIRAGFQS 514
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BLAST of mRNA_H-elongata_contig20158.5689.1 vs. uniprot
Match: A0A4D9CLS1_9STRA (USP domain-containing protein n=5 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLS1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.040e-12
Identity = 62/203 (30.54%), Postives = 99/203 (48.77%), Query Frame = 3 
Query:  231 SHSLKVGDLLDARDTFGNWCVAQVVKKEGECLRVHFQGLHSRFDEDIRLESSKLAKLGTNTSGRDTGQPA---------RRPGAPWNIAPAQ----VRAVRDNVVEMVTVRAAKKGEGRDGRFWEIDLPAFIERCLTSSF-------TDLRALPHINNLFMVMLEVIAKRLQDPAPMPRHLLQTLSRLGHNDRRCEWYYNNYG 779
            +  ++VGD++D +D+ G WCVAQV     E + V  + L   +DE++ L SS+LA  GT+T     G+P          R  GA W+    +    V  +   + E+    A   GE  D  F    LPAF+E CL SS+       T L  L  +   + ++  V+++  + P P+P  LL+ LS + + D  C +++  YG
Sbjct:  179 TQGVRVGDMVDLKDSTGKWCVAQVRLVTEELVSVRPRDLD--WDEELPLLSSRLAMAGTHTGVAVEGEPGENAPGAMSVRPQGALWSWTTGELADMVARMEARLEEVEGQPAGGPGEPDD--FCRQALPAFMEVCLASSYPAEEDDATLLGMLEGLKVAYALLARVLSRLGEAPCPLP--LLRALSMVFNADPACSYFFETYG 375
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BLAST of mRNA_H-elongata_contig20158.5689.1 vs. uniprot
Match: A0A813CFD0_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CFD0_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 1.310e-8
Identity = 40/125 (32.00%), Postives = 67/125 (53.60%), Query Frame = 3 
Query:  240 LKVGDLLDARDTFGNWCVAQVVKKEGECLRVHFQGLHSRFDEDI-RLESSKLAKLGTNTSGRDTGQPARRPGAPWNIAPAQVRAVRDNVVEMVTVRAAKKGEGRDGRFWEIDLPAFIERCLTSSF 611
            LK GD  D +DT   + VA+VV+ + + + VH++G  SR+D    + ++SK AKLGT T+G+DT +P  R G  W     +   V + + + +              + ++DLP F+E+ L S +
Sbjct:  147 LKEGDWFDCKDTTNKFLVAKVVEVKEDRIHVHYKGWPSRWDAWFYKTDTSKFAKLGTFTAGKDT-RPRIRQGELWEATEEEFAQVEEMMKDFME---GTMPPDEQESWLKVDLPTFLEKTLASRY 267
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BLAST of mRNA_H-elongata_contig20158.5689.1 vs. uniprot
Match: A0A7S1UK73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK73_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.010e-7
Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 3 
Query:  543 GRDGRFWEIDLPAFIERCLTSSFTDLRALPHINNLFMVMLEVIAKRLQD-PAPMPRHLLQTLSRLGHNDRRCEWYYNNYGR 782
            G  G FW +DLP F+E C+TS+F D   LP + +    +++VI   ++D   P+   +LQ   RL   D+ C ++YN Y R
Sbjct:   16 GSPGSFWVVDLPNFVEACMTSNFEDPGVLPLVLDALRYVMDVILDNIEDIDRPVMPEILQQFHRLSGVDQHCNYFYNRYAR 96
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BLAST of mRNA_H-elongata_contig20158.5689.1 vs. uniprot
Match: A0A7R9U6L2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6L2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.540e-7
Identity = 35/138 (25.36%), Postives = 68/138 (49.28%), Query Frame = 3 
Query:  426 TGQPARRPGAPWNIAPAQVRAVRDNVVEMVTVRAAKKGEGRDGRFWEIDLPAFIERCLTSSFTDLRALPHINNLFMVMLEVIAKRLQDPA-PMPRHLLQTLSRLGHNDRRCEWYYNNYGRSSSTSYEAAVAAVEDGVA 836
            TG   R  G  W ++  ++ + ++ +      R++ + +G   RFW +DLP F+E C+TS + D   LP + +    +++V+   + +   P+   +LQ   RL   D+ C ++Y+ Y +    S    V   +D +A
Sbjct:    1 TGWRKRTVGGIWAVSEEEIASFKEKLRVAHDARSSGQEQG-GSRFWVVDLPHFVEACMTSQYEDPSVLPIVMDFLRYLMDVVVDNIGNTQRPVMPEILQQFHRLCGVDQHCAYFYDRYSKGHIDSIAEYVDEPQDYLA 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20158.5689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FN61_ECTSI6.320e-8654.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CLS1_9STRA3.040e-1230.54USP domain-containing protein n=5 Tax=Monodopsidac... [more]
A0A813CFD0_9DINO1.310e-832.00Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A7S1UK73_9STRA1.010e-737.04Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9U6L2_9STRA3.540e-725.36Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20158contigH-elongata_contig20158:1975..4849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size927
Cds size417
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930133.9910157-UTR-H-elongata_contig20158:1974..21831622930133.9910157-UTR-H-elongata_contig20158:1974..2183Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20158 1975..2183 +
1691679293.8303602-UTR-H-elongata_contig20158:1974..21831691679293.8303602-UTR-H-elongata_contig20158:1974..2183Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20158 1975..2183 +
1622930134.0152583-UTR-H-elongata_contig20158:2196..22321622930134.0152583-UTR-H-elongata_contig20158:2196..2232Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20158 2197..2232 +
1691679293.838544-UTR-H-elongata_contig20158:2196..22321691679293.838544-UTR-H-elongata_contig20158:2196..2232Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20158 2197..2232 +
1622930134.0338848-UTR-H-elongata_contig20158:2604..27481622930134.0338848-UTR-H-elongata_contig20158:2604..2748Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20158 2605..2748 +
1691679293.847309-UTR-H-elongata_contig20158:2604..27481691679293.847309-UTR-H-elongata_contig20158:2604..2748Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20158 2605..2748 +
1622930134.0558312-UTR-H-elongata_contig20158:3462..35221622930134.0558312-UTR-H-elongata_contig20158:3462..3522Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20158 3463..3522 +
1691679293.856958-UTR-H-elongata_contig20158:3462..35221691679293.856958-UTR-H-elongata_contig20158:3462..3522Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20158 3463..3522 +
1622930134.0845456-UTR-H-elongata_contig20158:3891..39511622930134.0845456-UTR-H-elongata_contig20158:3891..3951Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20158 3892..3951 +
1691679293.873348-UTR-H-elongata_contig20158:3891..39511691679293.873348-UTR-H-elongata_contig20158:3891..3951Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20158 3892..3951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930134.1065993-CDS-H-elongata_contig20158:3951..40951622930134.1065993-CDS-H-elongata_contig20158:3951..4095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20158 3952..4095 +
1691679293.8867435-CDS-H-elongata_contig20158:3951..40951691679293.8867435-CDS-H-elongata_contig20158:3951..4095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20158 3952..4095 +
1622930134.1186807-CDS-H-elongata_contig20158:4576..48491622930134.1186807-CDS-H-elongata_contig20158:4576..4849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20158 4577..4849 +
1691679293.896196-CDS-H-elongata_contig20158:4576..48491691679293.896196-CDS-H-elongata_contig20158:4576..4849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20158 4577..4849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20158.5689.1prot_H-elongata_contig20158.5689.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20158 3952..4849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20158.5689.1

>prot_H-elongata_contig20158.5689.1 ID=prot_H-elongata_contig20158.5689.1|Name=mRNA_H-elongata_contig20158.5689.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MVTVRAAKKGEGRDGRFWEIDLPAFIERCLTSSFTDLRALPHINNLFMVM
LEVIAKRLQDPAPMPRHLLQTLSRLGHNDRRCEWYYNNYGRSSSTSYEAA
VAAVEDGVATEFVVAETKSEWDQTYVQPPRGSIRSSFYS
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mRNA from alignment at H-elongata_contig20158:1975..4849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20158.5689.1 ID=mRNA_H-elongata_contig20158.5689.1|Name=mRNA_H-elongata_contig20158.5689.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2875bp|location=Sequence derived from alignment at H-elongata_contig20158:1975..4849+ (Himanthalia elongata Himel1 dioecious)
GTAGGGTTTGGTTCATCCGATCCAAACGTGGAGGAGGATGCAGAAATGGC
CGAGAGAAAGCGCGCGGCTGGCGGAGGAGAGGCCGAGCGGCAAAAGTGTG
AGCCTCGACGCGCGTGGGAGCGCTTGGGCCGCAGCTTGAATCCGGCGGCT
TCATCGGACGGTTGCGATGGTGACGACGGCGGTGGCCCCGTAGTATTCTT
ATGGTATAGGCGGGGTTCGGAGGACGACTCCCTCTCGTGGTCTTCGCACT
CTCTGAAGGTAGGATGGGAAGGGAGGGGAGAGAGAGAAGGAGAGAGTTTG
ATCAATAGTTATATTGATGCGAGAGTCTAGGAACCCTGTGACACGGTTCT
GCGCGACGTCCTGCTGTGCACGGGAGACGTGACGCCTTTCCGGAGAAGTT
TTGCCTTTCGTTACCTTCGGCAAGAATATGCCCGGGGCGCTTGTTGACAA
GACAGGTCGCAACCCCGTTGTCTTTATTTTTCAAAGCGACGAGGGTATCG
GTTTGCGGTTTGTTGTACATAGAGATGCATGTATATGGTGCGTGGAAAAG
GAGTGTTGGGTTTGTCGTCCCCCCCCTCGATGATGGATGAAACCATGCGA
CTCGCCCGCCTGCCGCCGTATTAATTCCAGGTTGGCGACTTGTTGGACGC
CCGCGATACCTTCGGCAACTGGTGCGTGGCTCAGGTGGTGAAGAAAGAGG
GAGAGTGTTTGAGGGTTCACTTTCAGGGCTTGCATTCCAGGTTCGACGAA
GACATCCGACTCGAGTCGTCCAAGGTAAGTCTCGATTTCACATTTGCCTT
GCCTTGCCTTGCCTTGCCTCCCTCCGTCCTTAGTTGACTTCTCTTCGATA
CCAGTGAAGGATCTGCGACATCCGGTAGTATTAGTAGTAGTAGTAGAGGA
TCGCCATATCTCCTTCAACTCCGGTGGTTTACCCTTGTAAAACCGATAAT
GGCTTTGACTCAGGCTTCTGTACTATTATAATATAACTCTTAATAACTGT
AGTTGGAGTGCTGTTTAGTGGACTCTTGATGGCGAACGTCGCTTGCAGCG
GCTGCTGGCAGCTTTTTCGTCATTTTCATCGAATGAAAAATAGAAGAGTC
TGCACTGCTAAGGCGTAAAAAGAGAGATGGCGGGTTCCGCTCGTTGGCTA
TAAATTCATGGAGTGCGAGAACTGCGCGACGACGCGGTGCCCTTCCTAGA
TTAATTGTACGAGTGGTACACAGTACATTTTCATTTTAAACGACGGTCGG
GGGGGTTTTGCGTTGGTATTATGCCATTCAACGTTGCCGTTACAGCGTTG
GAACATTTCAGCCCGGGTTCTTACGATGTCATAACACATACACACACACA
CGCCCTGTTCCGCATTTTTTCCCACCCTCCCCCCACGCGCCCTATTCTGC
ATTTTCTTTTTCCGCGCCGCTTTGCACTCGTGGTTCGACTCCCATCGTAA
TCGCCCTGACCAAACCTTGAACGGTGCTGAAACCGCAGCTGGCAAAGCTG
GGCACCAACACGTCCGGCAGGGACACCGGGCAGCCTGCGAGGAGACCGGT
GAGGGAGTGAGAGAGGGAGGGGGAAAGTATTATAATGCCTCTATATTTTT
AGAAACCTCACTGCTGTGGTGGTGTTCGTTTCAAATGGGGAAAGGCTTAA
GAACGTGCTATGTAATGCGACGCGCGTCGCATTCTGCAAGGCGGTGGAGA
CGTCTGGCAACGGATTGGGCAGGAGATAGGGTGGTCCTCGTAGCTCTAGA
TCCTCCATTTCCGGGAGAAAGATACTCGCAAATCCTCCCGCCTGTCCCCG
AGTAGGTGTCTGGCAGAGGCTGTGTTTTTATACCGCGCCCCAAAGCCCAA
GCATTTCCTCTGTTTCTATTGGCATCCTTCTTCTTATCGGGGCCGGGGGT
CCTTCCTTTATTTGCAGGGCGCCCCCTGGAACATCGCCCCGGCACAAGTG
CGCGCGGTGAGGGATAACGTGGTGGAGATGGTGACGGTGCGGGCGGCGAA
GAAAGGAGAAGGACGGGACGGCAGGTTCTGGGAGATCGACCTGCCCGCCT
TCATCGAGCGCTGCCTGACGTCTTCCTTCACGGATCTCCGGGCGCTGCCG
CATATCAATAACCTCTTCATGGTACGTACGTACAAACCTACAACCACCGG
AACTCATGCTGTATTTGTCGCGAGCCCTGCAAAGAGCGCAACGGCGCAGA
TCGTGTTAAATTTGACGTCTAAAGTTGGTGTGGTTTTGACCACGGGTTAA
AAAAAAAAAAGGGATCGAAAGGGTTGTTGACTCTTGTTTTCGTCTTCCGC
CAGTTCATTGATCTGTGACTTTTCAGCATTGATATGTGTCTGGTTGACGC
TTATTCATCTCTTTAGTTTCAAAAAGTCAGGCTCTCATTTTTTAAAACTC
TCAGGCGTTCCGAGTCGTGGGTAATGACTATTAAAAATAATCCCCCCTTC
CCATTCAAAAATCGTGCAATATAAGCTCTATATACATGTGTTACTCATCG
TCGCCACGATAACGATAGCCAGCGGATGACTTACCGACCAGCTCCGCCTG
CTTTATAGCCGGTACGCCAACCGCACAACCCGCTGCCGCAACTCGTGCGC
AGGTAATGCTAGAGGTCATCGCGAAACGGCTGCAGGATCCCGCGCCCATG
CCGCGCCACCTGCTGCAGACGCTGTCGAGGCTGGGGCACAACGATCGACG
CTGCGAGTGGTACTACAACAACTACGGGCGTTCCAGCAGCACCTCGTACG
AGGCGGCGGTGGCAGCGGTAGAAGACGGGGTTGCGACGGAGTTTGTGGTG
GCGGAGACGAAGTCCGAGTGGGATCAGACGTACGTGCAGCCCCCCCGGGG
AAGCATCCGGAGTAGTTTTTATTCG
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Coding sequence (CDS) from alignment at H-elongata_contig20158:1975..4849+

>mRNA_H-elongata_contig20158.5689.1 ID=mRNA_H-elongata_contig20158.5689.1|Name=mRNA_H-elongata_contig20158.5689.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig20158:1975..4849+ (Himanthalia elongata Himel1 dioecious)
ATGGTGACGGTGCGGGCGGCGAAGAAAGGAGAAGGACGGGACGGCAGGTT
CTGGGAGATCGACCTGCCCGCCTTCATCGAGCGCTGCCTGACGTCTTCCT
TCACGGATCTCCGGGCGCTGCCGCATATCAATAACCTCTTCATGATGGTG
ACGGTGCGGGCGGCGAAGAAAGGAGAAGGACGGGACGGCAGGTTCTGGGA
GATCGACCTGCCCGCCTTCATCGAGCGCTGCCTGACGTCTTCCTTCACGG
ATCTCCGGGCGCTGCCGCATATCAATAACCTCTTCATGGTAATGCTAGAG
GTCATCGCGAAACGGCTGCAGGATCCCGCGCCCATGCCGCGCCACCTGCT
GCAGACGCTGTCGAGGCTGGGGCACAACGATCGACGCTGCGAGTGGTACT
ACAACAACTACGGGCGTTCCAGCAGCACCTCGTACGAGGCGGCGGTGGCA
GCGGTAGAAGACGGGGTTGCGACGGAGTTTGTGGTGGCGGAGACGAAGTC
CGAGTGGGATCAGACGTACGTGCAGCCCCCCCGGGGAAGCATCCGGAGTA
GTTTTTATTCGGTAATGCTAGAGGTCATCGCGAAACGGCTGCAGGATCCC
GCGCCCATGCCGCGCCACCTGCTGCAGACGCTGTCGAGGCTGGGGCACAA
CGATCGACGCTGCGAGTGGTACTACAACAACTACGGGCGTTCCAGCAGCA
CCTCGTACGAGGCGGCGGTGGCAGCGGTAGAAGACGGGGTTGCGACGGAG
TTTGTGGTGGCGGAGACGAAGTCCGAGTGGGATCAGACGTACGTGCAGCC
CCCCCGGGGAAGCATCCGGAGTAGTTTTTATTCG
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