prot_H-elongata_contig20102.5666.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20102.5666.1
Unique Nameprot_H-elongata_contig20102.5666.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length146
Homology
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BLAST of mRNA_H-elongata_contig20102.5666.1 vs. uniprot
Match: D8LCK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK8_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 7.160e-5
Identity = 29/82 (35.37%), Postives = 41/82 (50.00%), Query Frame = 0 
Query:   35 CSTEAIACYNDRDCKICVEQLL--DLADTSGVSFITTDCSALFGDVCNVIDTDECDIDNEYLVYFGICVAEEEYGCTGFTSC 114
            C  +  +C  D +C  C++ L   DL    G   +   C  L+  VC   +   C+ DNE LV F  CVA++ YGC  FT+C
Sbjct:   44 CPVDLFSCLGDDECSSCLDALQENDLPILGGDFEL---CGDLYAGVCAAAEAVGCNTDNEDLVEFLTCVADDSYGCGDFTTC 122
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BLAST of mRNA_H-elongata_contig20102.5666.1 vs. uniprot
Match: A0A6H5K763_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K763_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 9.230e-5
Identity = 28/83 (33.73%), Postives = 40/83 (48.19%), Query Frame = 0 
Query:   35 CSTEAIACYNDRDCKICVEQLLDLADTSGVSFITTD---CSALFGDVCNVIDTDECDIDNEYLVYFGICVAEEEYGCTGFTSC 114
            C  +  +C  D +C  C    LD    + +  I  D   C  L+  VC   +   C+ DNE LV F  CVA++ +GC  FT+C
Sbjct:   42 CPVDLFSCLGDDECSSC----LDALQENDLPLIGGDFELCDDLYASVCAAAEAIGCNTDNEELVEFLTCVADDSFGCGDFTTC 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20102.5666.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCK8_ECTSI7.160e-535.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K763_9PHAE9.230e-533.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..145
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.788

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20102contigH-elongata_contig20102:4106..4543 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20102.5666.1mRNA_H-elongata_contig20102.5666.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20102 4106..5421 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20102.5666.1 ID=prot_H-elongata_contig20102.5666.1|Name=mRNA_H-elongata_contig20102.5666.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MQNPVGVRASPWQLLWLLTFVICQQGHSQNFLSSCSTEAIACYNDRDCKI
CVEQLLDLADTSGVSFITTDCSALFGDVCNVIDTDECDIDNEYLVYFGIC
VAEEEYGCTGFTSCTAAIANQAAVNTVPTGSAPTAAALSTAPPLP*
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