mRNA_H-elongata_contig20102.5666.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20102.5666.1
Unique NamemRNA_H-elongata_contig20102.5666.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20102.5666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20102contigH-elongata_contig20102:4106..5421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1316
Cds size438
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930131.7125506-CDS-H-elongata_contig20102:4105..45431622930131.7125506-CDS-H-elongata_contig20102:4105..4543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20102 4106..4543 +
1691679292.9304292-CDS-H-elongata_contig20102:4105..45431691679292.9304292-CDS-H-elongata_contig20102:4105..4543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20102 4106..4543 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930131.7257874-UTR-H-elongata_contig20102:4543..54211622930131.7257874-UTR-H-elongata_contig20102:4543..5421Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20102 4544..5421 +
1691679292.9378276-UTR-H-elongata_contig20102:4543..54211691679292.9378276-UTR-H-elongata_contig20102:4543..5421Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20102 4544..5421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20102.5666.1prot_H-elongata_contig20102.5666.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20102 4106..4543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20102.5666.1

>prot_H-elongata_contig20102.5666.1 ID=prot_H-elongata_contig20102.5666.1|Name=mRNA_H-elongata_contig20102.5666.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=146bp
MQNPVGVRASPWQLLWLLTFVICQQGHSQNFLSSCSTEAIACYNDRDCKI
CVEQLLDLADTSGVSFITTDCSALFGDVCNVIDTDECDIDNEYLVYFGIC
VAEEEYGCTGFTSCTAAIANQAAVNTVPTGSAPTAAALSTAPPLP*
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mRNA from alignment at H-elongata_contig20102:4106..5421+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20102.5666.1 ID=mRNA_H-elongata_contig20102.5666.1|Name=mRNA_H-elongata_contig20102.5666.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1316bp|location=Sequence derived from alignment at H-elongata_contig20102:4106..5421+ (Himanthalia elongata Himel1 dioecious)
ATGCAAAACCCAGTGGGAGTCAGGGCCTCGCCGTGGCAGCTGCTTTGGCT
GCTGACCTTTGTGATTTGCCAGCAGGGCCACTCGCAGAACTTCCTGAGCT
CCTGTTCCACGGAGGCGATCGCGTGCTATAACGACAGGGACTGCAAGATC
TGTGTCGAGCAGCTACTAGACCTGGCAGACACCAGCGGCGTCTCCTTCAT
CACGACGGACTGTTCAGCCTTGTTTGGGGACGTCTGCAACGTGATCGACA
CGGACGAGTGCGATATCGACAACGAGTACCTCGTGTACTTTGGCATATGC
GTAGCGGAGGAAGAATACGGCTGCACCGGCTTTACATCTTGCACAGCGGC
AATCGCAAACCAGGCGGCAGTGAATACTGTGCCCACTGGAAGCGCTCCCA
CCGCCGCTGCCTTGTCGACCGCACCACCGCTACCTTAGTGCCGAAGTCAC
AGCGCCGCCCGATACAATAGCTCCCACTCCCGTTGCTTAGGATGCGAAAA
GCGTAGTCCCTAACCCTGCTGCAAGCGGTGCAAAGAGTATGGCCCCAACG
GAAGCATCCTCGCTGAAGACGGGGACTGCGTCCGAGTCTAACGCTGGTGT
GAGAGTGTCGTCGATCACGCACTTTGCTACATCGGTCGCCCTGATTCTGG
AATGAACTCTGCTGGTTGCATAGTTTGAGGAGAAGGCTCGCGGGGCGTGA
CATCTGAGATAAAGAAGCCGCGGAAAGAGCAGGGGAGAAGAAAGATTGAC
GGGTTCCTGTTTAAATTAATTATTTGTGTGATCGGCGAGGAAGAGACAAA
ATACGAACCAGGATAAAAGATAACTCTTTTGATGATGTCACCTGCTTTAT
CCTGCGATCGAGTTTGGATTTCTATCCTTTTATTGACGCGTTTTGCTTAA
ATTAATTAAATACGCGCGTGCGTCTACATCTGAACGGTTCTGGCTGGAGC
TGTGATATACGGTCGTAGTTTTAGGATCTTCGTGTCGAGGTTTGTGTCCA
GAGGTTTGCGCGGATTTCCCTGTGTTTATACCGCTGCTATAATCTCGACG
CCGTCGATAAACGCGGTAATCAAAACATTTGCTTGATTTTTCGTTGCAAT
TGCTTGTATGCCTGCCTTCTTGTGTACAGCGTGGATTTCGTAATTTGTTT
ATTTATTTATTCTTGTGGTGTGGACAAACACGTAGCCATACCTATATTAT
ATCTTCCAATGAGAAGCGGCCTTCGATGTTCGCACACCGTACGGTCTTAT
AGCGTCGATCATAGCCTACACCGAGGGCTGTTCGACACGGGAAGGGAGCA
AGATGGCACGGAGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig20102:4106..5421+

>mRNA_H-elongata_contig20102.5666.1 ID=mRNA_H-elongata_contig20102.5666.1|Name=mRNA_H-elongata_contig20102.5666.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=876bp|location=Sequence derived from alignment at H-elongata_contig20102:4106..5421+ (Himanthalia elongata Himel1 dioecious)
ATGCAAAACCCAGTGGGAGTCAGGGCCTCGCCGTGGCAGCTGCTTTGGCT
GCTGACCTTTGTGATTTGCCAGCAGGGCCACTCGCAGAACTTCCTGAGCT
CCTGTTCCACGGAGGCGATCGCGTGCTATAACGACAGGGACTGCAAGATC
TGTGTCGAGCAGCTACTAGACCTGGCAGACACCAGCGGCGTCTCCTTCAT
CACGACGGACTGTTCAGCCTTGTTTGGGGACGTCTGCAACGTGATCGACA
CGGACGAGTGCGATATCGACAACGAGTACCTCGTGTACTTTGGCATATGC
GTAGCGGAGGAAGAATACGGCTGCACCGGCTTTACATCTTGCACAGCGGC
AATCGCAAACCAGGCGGCAGTGAATACTGTGCCCACTGGAAGCGCTCCCA
CCGCCGCTGCCTTGTCGACCGCACCACCGCTACCTTAGATGCAAAACCCA
GTGGGAGTCAGGGCCTCGCCGTGGCAGCTGCTTTGGCTGCTGACCTTTGT
GATTTGCCAGCAGGGCCACTCGCAGAACTTCCTGAGCTCCTGTTCCACGG
AGGCGATCGCGTGCTATAACGACAGGGACTGCAAGATCTGTGTCGAGCAG
CTACTAGACCTGGCAGACACCAGCGGCGTCTCCTTCATCACGACGGACTG
TTCAGCCTTGTTTGGGGACGTCTGCAACGTGATCGACACGGACGAGTGCG
ATATCGACAACGAGTACCTCGTGTACTTTGGCATATGCGTAGCGGAGGAA
GAATACGGCTGCACCGGCTTTACATCTTGCACAGCGGCAATCGCAAACCA
GGCGGCAGTGAATACTGTGCCCACTGGAAGCGCTCCCACCGCCGCTGCCT
TGTCGACCGCACCACCGCTACCTTAG
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