prot_H-elongata_contig20034.5642.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20034.5642.1
Unique Nameprot_H-elongata_contig20034.5642.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length109
Homology
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BLAST of mRNA_H-elongata_contig20034.5642.1 vs. uniprot
Match: D7FMT6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT6_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.320e-23
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 0 
Query:    1 SLFRRYAEPGYVQIYTKGEGIVEFNSLDEMDHVIKKLDDTKFRGSIVKLTEDAKCKAKREAELPP 65
            SLFR+YAEPGYVQIYTKGEG+VEFNSLDEM+HVI+KLD+TKF G  ++L ED KCKA+R+    P
Sbjct:  162 SLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRLIEDPKCKARRDENPSP 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20034.5642.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMT6_ECTSI4.320e-2372.31RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..53
e-value: 4.0E-8
score: 35.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 2..47
e-value: 1.9E-4
score: 21.2
NoneNo IPR availablePANTHERPTHR23003:SF30SERINE/ARGININE-RICH-SPLICING FACTOR 5A-RELATEDcoord: 2..106
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 2..106
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20034contigH-elongata_contig20034:4469..6600 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20034.5642.1mRNA_H-elongata_contig20034.5642.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20034 4469..6600 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20034.5642.1 ID=prot_H-elongata_contig20034.5642.1|Name=mRNA_H-elongata_contig20034.5642.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
SLFRRYAEPGYVQIYTKGEGIVEFNSLDEMDHVIKKLDDTKFRGSIVKLT
EDAKCKAKREAELPPEGDDRGRDKGRDRSRHRSRSKSSPGRRKRDRSPSR
SRSRSRTKR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf