mRNA_H-elongata_contig20034.5642.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20034.5642.1
Unique NamemRNA_H-elongata_contig20034.5642.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20034.5642.1 vs. uniprot
Match: D7FMT6_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMT6_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.320e-23
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 SLFRRYAEPGYVQIYTKGEGIVEFNSLDEMDHVIKKLDDTKFRGSIVKLTEDAKCKAKREAELPP 195
            SLFR+YAEPGYVQIYTKGEG+VEFNSLDEM+HVI+KLD+TKF G  ++L ED KCKA+R+    P
Sbjct:  162 SLFRKYAEPGYVQIYTKGEGLVEFNSLDEMEHVIRKLDNTKFDGEYIRLIEDPKCKARRDENPSP 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20034.5642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMT6_ECTSI4.320e-2372.31RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20034contigH-elongata_contig20034:4469..6600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue2.7e-20
Seed eggNOG ortholog2880.D7FMT6
KEGG koko:K12890
KEGG Pathwayko03040,ko04657,ko05168,map03040,map04657,map05168
EggNOG free text desc.RNA splicing
EggNOG OGsCOG0724@1,KOG0105@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSR RNA splicing protein
Ec32 orthologEc-21_000220.1
Exons3
Model size327
Cds size327
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20034.5642.1prot_H-elongata_contig20034.5642.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20034 4469..6600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930128.3620927-CDS-H-elongata_contig20034:4468..45321622930128.3620927-CDS-H-elongata_contig20034:4468..4532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20034 4469..4532 -
1691679291.9323072-CDS-H-elongata_contig20034:4468..45321691679291.9323072-CDS-H-elongata_contig20034:4468..4532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20034 4469..4532 -
1622930128.3803804-CDS-H-elongata_contig20034:5184..52971622930128.3803804-CDS-H-elongata_contig20034:5184..5297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20034 5185..5297 -
1691679291.9546933-CDS-H-elongata_contig20034:5184..52971691679291.9546933-CDS-H-elongata_contig20034:5184..5297Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20034 5185..5297 -
1622930128.392907-CDS-H-elongata_contig20034:6450..66001622930128.392907-CDS-H-elongata_contig20034:6450..6600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20034 6451..6600 -
1691679291.9707515-CDS-H-elongata_contig20034:6450..66001691679291.9707515-CDS-H-elongata_contig20034:6450..6600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20034 6451..6600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20034.5642.1

>prot_H-elongata_contig20034.5642.1 ID=prot_H-elongata_contig20034.5642.1|Name=mRNA_H-elongata_contig20034.5642.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
SLFRRYAEPGYVQIYTKGEGIVEFNSLDEMDHVIKKLDDTKFRGSIVKLT
EDAKCKAKREAELPPEGDDRGRDKGRDRSRHRSRSKSSPGRRKRDRSPSR
SRSRSRTKR
back to top

mRNA from alignment at H-elongata_contig20034:4469..6600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20034.5642.1 ID=mRNA_H-elongata_contig20034.5642.1|Name=mRNA_H-elongata_contig20034.5642.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2132bp|location=Sequence derived from alignment at H-elongata_contig20034:4469..6600- (Himanthalia elongata Himel1 dioecious)
AGCCTGTTCCGCAGGTATGCCGAGCCGGGGTACGTCCAGATCTATACCAA
AGGAGAAGGTATTGTGGAGTTTAATTCCCTGGACGAAATGGACCACGTGA
TCAAGAAGCTTGACGACACCAAGTTCCGCGGTTCGATCGTTAAGCTCACG
GTAAGGGATGCGTCACCTGTATCAAACCGTACAGAAACACATCCCGGCTG
CAAGGTCTTTTCTCGAGAAAAGGTGTCCCGTATTTCTTACTGGTATTCTA
CTTGGGGTTTCCAATAAAATAAAATGGCGTGTCCCTGTCGATAGATGAAT
AGATCGATTGCCTCTCGACTTCCTCGCTCGTTATTCAATTCAATTCAGTC
ACACATCATAAGGCGTTGATAATCATTTCGTAGCACGCTGGTGTAGCATG
TCATGATCTCTTGTGGAGGGCTATAGTCAAATCGACAGCAACAGTAACAA
CACAGGGTATTAACGGGGTTACAAAACTTTAAATTCCAGCCGATTTAAAT
TTGAATCTGGCTCTGATTGGACAAAGGCTAGGCGTTATTTGCTTTCGACC
AATCAGAGCCCGATTTTTAATTTAAATCAGCTGGAAATTTTAATTTTTGT
ATTCCGATAAGACCAGGCCGATTTAAATTAAAAATCGAGCTCTGATTGGT
CGAAAGCAAATAACGCCTAGCCTTTGTCCAATCAGCGCCCGATTTAAATT
TAAATCGGCTGGAAATTTATTTTTTTGTGCTCTGATAAGACCCGTCCTTA
GCAGATATAGCCAGTTCGAGATAATTGAAAAAATATATAATATTAATATT
AGTATTCATGCACGATATGTAACCCTTGACGTTTGTTTTTGCCCTTCTGT
GTTGTCACGATGAACAAAAGAGGAATGTTTGGCGTCCATAACCGGGGTTT
TTCATATGTTATCCCATTTTATTCTGAACGTCAAAATTGTGGACGCACCA
GCCGGTGTCACACAGGATTTCTTCACCTTCCGTCTGCGTTGCTTGACCTA
TTTTTTTTATCGCGAGGACGATTTAGTCATCTCTTTCCCTCGTCGACCGT
GAAGTATACTGTATATAGAACATCGAATTCTGTGAACCCACGTAATGTGA
GAACAATCCCAGTTCGTGTGATTGAGCCGAGATTCGAACTTACGTCCCAA
CGTCAGAAGGTTTCGAGGTTACCAACTGATCCACCGGGGCGACCATACTG
CACTGTATATTGTAGTAGTATATGGTACTAGTACTCTAGGTTGTTTTGTA
CTATACTGTGTATTGTACGGTATAATGTAATATATACTGTATGCGGTATA
CAGGAAGATGCCAAGTGCAAGGCCAAGCGAGAGGCGGAGTTACCCCCAGA
GGGGGATGACAGGGGCAGGGACAAGGGGAGGGACAGAAGCCGCCACCGAT
CACGCTCGAAGTCTAGGTCCAGGTGAGGGATAATTGCGGTTTAGTTCGGT
TTGGTATGGTTTGTAATCGGATGTCTTGATATGATAAGGTGTTGTTGTGT
ATGGAATTGCGTGGGACAATAAAAATGTATGGTATTAATAGGGTGTGGCG
GCTCGGCATGGTACGGGACGGAATCTGATAAATGTAGACGGTGCTTTCGA
AAAAAAGGGAGTGATGTATGTTCGTTTATATACCCAGTCACTTGAATCAA
GTGGTCTAGGGGTCCCCCTAACCAAACTAACTCCCCAAAACTGGATGCTG
GTTCACATTTCCGGGGCAATATCTCTCGCCACGGACAAGTCTTTAGGCGA
CCCCCCTTTTTTCATTTTTCTTTCAAGATTCGAAAAAGCGTCTTATCGTC
TCAATTGTTGTTTATGGTGTAACGATGTATTATTGGCATATCATTTTGAG
CTGATTTCACCCGTTCATTTTTGTCTAAAATTGTTTTTCATAGAAAATAC
GAAGTATATGAACTCATTCAATCCCTCCGAACATCAACACATTCTTAGCA
ACATGAGAGGTGCAGTCCAGGGGAACAACTATTGTCAGGTTCGAATTTCT
ACACTACTTTTTGTTGCGTTTCGACATTTTTAATGTTATGTAAGGCGCAA
ACGTTCTTACTCTGCCAGTCCTGGCCGCCGCAAGAGGGACCGCAGCCCTA
GCCGCTCCAGGTCACGGTCGCGAACGAAGCGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20034:4469..6600-

>mRNA_H-elongata_contig20034.5642.1 ID=mRNA_H-elongata_contig20034.5642.1|Name=mRNA_H-elongata_contig20034.5642.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig20034:4469..6600- (Himanthalia elongata Himel1 dioecious)
AGCCTGTTCCGCAGGTATGCCGAGCCGGGGTACGTCCAGATCTATACCAA
AGGAGAAGGTATTGTGGAGTTTAATTCCCTGGACGAAATGGACCACGTGA
TCAAGAAGCTTGACGACACCAAGTTCCGCGGTTCGATCGTTAAGCTCACG
AGCCTGTTCCGCAGGTATGCCGAGCCGGGGTACGTCCAGATCTATACCAA
AGGAGAAGGTATTGTGGAGTTTAATTCCCTGGACGAAATGGACCACGTGA
TCAAGAAGCTTGACGACACCAAGTTCCGCGGTTCGATCGTTAAGCTCACG
GAAGATGCCAAGTGCAAGGCCAAGCGAGAGGCGGAGTTACCCCCAGAGGG
GGATGACAGGGGCAGGGACAAGGGGAGGGACAGAAGCCGCCACCGATCAC
GCTCGAAGTCTAGGAAGATGCCAAGTGCAAGGCCAAGCGAGAGGCGGAGT
TACCCCCAGAGGGGGATGACAGGGGCAGGGACAAGGGGAGGGACAGAAGC
CGCCACCGATCACGCTCGAAGTCTAGTCCTGGCCGCCGCAAGAGGGACCG
CAGCCCTAGCCGCTCCAGGTCACGGTCGCGAACGAAGCGCTCCTGGCCGC
CGCAAGAGGGACCGCAGCCCTAGCCGCTCCAGGTCACGGTCGCGAACGAA
GCGC
back to top