prot_H-elongata_contig19750.5514.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19750.5514.1
Unique Nameprot_H-elongata_contig19750.5514.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length547
Homology
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A6H5KYQ8_9PHAE (3'-5' exonuclease domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYQ8_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 2.970e-124
Identity = 227/400 (56.75%), Postives = 275/400 (68.75%), Query Frame = 0
Query:  146 LSHLAGTPTVDAFSGDVHLVALVAGKKSLTRLLHFVELVPPMDVPAAAAGNQTYLGRKAWMRPGMTQDQPPRPVQVRLIMGKALVNRLGEQDARAVMGGVRQGQLLYVTGRPTPETRLRLF--GDTSAARKNYASSLSENPDSSRGSVRSVVDDIYDLVCSSVRMLEDAPAVEPELVGNGDAWDGGRGYLKMDSHEREGVTYVDSSEALREMAEFMREALID-PHRDAAGDIGSGSTRGSGLGRIEAESRLALAIDCEWRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCFRRVCGVINLIDVARNAASLKKIPPEEKGSLSRLSNLVLGE 542
            L+  AGTPTVDA  GDVHLVA VAGK+SLTRLLHFV+LVPP    A    NQT L RKAWM PG T D+PP PV+V+LIMGK LV+RLG+Q+A   M GV++GQLLY+TGRPTP+TR        T+ + K+ ++ L                + YDLVC SVRMLEDAP VEPELVG GD W GG  YL+MD  E   V YVDS++ L+EM +F+R+ L+D P  +      SG  R           R ALA+DCEWRP   AG P NPV L+QLA GER F++DMLHVCR K  AA+A  A    +E   +GL + EA+LEEALGAVL +P VVKVG+GPKADFQ L++S+PHMPCFRRVCGV+NL  VA NA+SL+  P +EK SLSRL N+VLG+
Sbjct:  580 LARAAGTPTVDAIGGDVHLVATVAGKRSLTRLLHFVDLVPPAT-EATPVANQTCLVRKAWMVPGNTPDRPPTPVKVQLIMGKTLVDRLGQQEALVAMRGVKRGQLLYITGRPTPDTRKHHLDGAPTTDSNKDDSAKL----------------ETYDLVCCSVRMLEDAPLVEPELVGKGDEWTGGGDYLEMDLEES-AVVYVDSAKRLKEMGKFLRKTLLDVPAVEGGAKPPSGGDR---------PQRPALAVDCEWRPARVAGTPANPVCLLQLAAGERTFIVDMLHVCRPK-SAAVATTA----EEETASGLTKREALLEEALGAVLGSPGVVKVGLGPKADFQSLIRSYPHMPCFRRVCGVVNLCHVASNASSLRGKPADEKASLSRLCNVVLGK 947          
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A7S1URP8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1URP8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.270e-15
Identity = 105/404 (25.99%), Postives = 172/404 (42.57%), Query Frame = 0
Query:  161 DVHLVALVAGKKSLTRLLHFVELVPPMDVPAAAAGNQTYLGRKAWMRPGMTQDQPPRPVQVRLIMGKALVNRLGEQDARAVMGGVRQGQLLYVTGRPTPETR---------------LRLFGDTSAARKNYASSLSENPDSSRGSVRSVVDDIYDLVCSSVRMLEDAPAVEPELVGNGDAWDGGRGYLKMD---SHEREGVTYVDSSEALREMAEFMREALIDPHRDAAGDIGSGSTRGSGLGRIEAESRLALAIDCEWRPGTRAGAP--QNPVSLMQLAMG--ERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCFRRVCGVINLIDVARNAASLKKIPPEEK--GSLSRLSNLVL 540
            D+ ++  V+G + + R L F +L PP  V      +Q  L  ++         +  R + V+LI GK L   LG+    A +   + GQLL V GR     R               ++ F          AS   +  +S    ++           S +R L+ A ++ PE+    D       +L +    S   + VT VDS + ++E  E +  A     ++A  +I       +GL R      +   IDCEW+P      P    PV +MQ++    ERVF+LD+  + RS                 +P    E+E    E++  +L +   +KVG    AD +RL  S+PH+P FR+V GV+ +  +AR +  L KI   ++   SL+RL+  ++
Sbjct:   28 DITVLGRVSGVRRMARRLVFCDLAPPDYVGEGTKQDQYDLPWRS--------GEDGRDMAVQLIAGKTLCKALGDVHGPAALKKFKPGQLLLVKGRTNVGNRDSLGSWIQKRSFDIVVQSFSILEHGGALLASKSKQERESPSLMIKKQKATKQMQSSSELRRLQLAASL-PEMGVGVD-------FLSLTDVFSQSMDPVTLVDSIDGVKEFREQLEAA-----KEAVENIDEAGASETGLNRT-----IMTGIDCEWKPSFMMPTPFEPQPVLVMQVSFQPLERVFILDLQVMLRSLLP------------PDEPMN--ELELGFSESMEVLLDSSKFLKVGFQLLADLRRLAGSYPHIPGFRQVNGVVEMAGIARKSLQLAKIRNSKQISTSLARLTEFLV 391          
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A0G4EU09_VITBC (Uncharacterized protein n=6 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EU09_VITBC)

HSP 1 Score: 84.0 bits (206), Expect = 3.610e-13
Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 0
Query:  146 LSHLAGTPTVDAFSGDVHLVALVAGKKSLTRLLHFVELVPPMDV--PAAAAGNQTYLGRKAWMRPGMTQDQPPRPVQVRLIMGKALVNRLGEQDARAVMGGVRQGQLLYVTGRP 257
            +  +A  PTVD FS  +HLVA+VA K+ +++ L F ELVPP D     A A  Q    RKAW     +   P + ++V+LI+G  L+ RLGE  A  +M  +R GQ +Y+TG P
Sbjct:  434 MERVARLPTVDVFSETIHLVAVVASKRMMSKRLVFAELVPPPDPYEDDAPASEQLCHSRKAWR----SVRDPSQCMEVQLIVGHTLIRRLGEDRATQLMRSLRPGQRVYITGIP 543          
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A2J7ZY56_9CHLO (tRNA_edit domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZY56_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 2.560e-9
Identity = 98/402 (24.38%), Postives = 156/402 (38.81%), Query Frame = 0
Query:  159 SGDVHLVALVAGKKSLTRLLHFVELVPPMDV----------PAAAAGNQTYLG---RKAWMRPGMTQDQPPRPVQVRLIMGKALVNRLGEQDARAVMGGVRQGQLLYVTGRPTPETRLRLFGDTSAARKNYASSLSENPDSSRGSVRSVVDDIYDLVCSSVRML--------------------EDAP-AVEPELV------------GNGDAWD-----GGRGYLKMDSHEREGVTYVDSSEALRE-------MAEFMREALIDPHRDAAGDIGSGSTRGSGLGRIEAESRLALAIDCEWRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCF 502
            SG V +VA+VA ++ + +LL FV LVP              P    G         R+ W  P         P +V+LIMGK L + LG + A+A++  V+ G ++ V G      +++  G   AA++ +                    D+ DLVC S  +L                    +DA  A +P LV            G+G+A       GG     + +    G     S+   RE             EA+   H +  G +G+ +         +A S   + +DCEW P  R    +  VS++Q+A  ++V+++D+L +                   +   G     A     L ++L AP VVK+G     D  RL +S+P +PCF
Sbjct:  293 SGAVRMVAVVAQRRRIAKLLQFVVLVPEQGAXXXXXXXXXAPRREKGRPDGAAVSLRRLWRNP-----DTGAPAEVQLIMGKTLESNLGAEQAQALLNQVKVGCVVEVAG----TVQVQPPGAAPAAQQRH--------------------DVLDLVCYSAVVLHRNKGRFDQALHGSKHAGFGDDAEDAEQPHLVEAVRQEGTLRPLGSGEAPGEGAPVGGGPRSALPAASVSGAACHVSNGWQREPPIEGDVQLVATEEAVERMHSEILGGVGA-AVGPPAEAVPDARSAQVVGLDCEWSPFGRRQT-KTAVSILQVATRKQVYIVDLLAL-------------------VGDGGTPGAHAF-SRFLSSLLAAPHVVKLGFQLGGDLARLCESYPRLPCF 643          
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: UPI001CFBDFF8 (uncharacterized protein LOC123208888 isoform X1 n=3 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFBDFF8)

HSP 1 Score: 70.9 bits (172), Expect = 3.100e-9
Identity = 38/152 (25.00%), Postives = 74/152 (48.68%), Query Frame = 0
Query:  390 ESRLALAIDCEWRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCFRRVCGVINLIDVARNAASLKKIPPEEKGSLSRLSNLVLG 541
            E    + +DCEW+P    G+  N VS+MQ+A  ++VF+LD++ +C+   D                        +L+  L  +L++P ++K+G   + D ++L  S+  + CF+    ++++ +V +          E +G LS L+  +LG
Sbjct:  383 EGCKVVGVDCEWKPNYEKGSKPNKVSIMQIASDKKVFILDLIKLCKDVPD------------------------VLDNCLTRILQSPGILKLGYNFQCDIKQLAHSYGELDCFKHYEMLLDIQNVFK----------EPRGGLSGLAKKILG 500          
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A2V0NYC6_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NYC6_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 9.990e-7
Identity = 45/147 (30.61%), Postives = 68/147 (46.26%), Query Frame = 0
Query:  359 MREALIDPHRDAAGDIGSGSTRGSGLGRIEAESRLALAIDCEWRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDP---AGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCF 502
            MRE L+       G +   +      G  +    + + +D EWRP  R GA   P +L+Q+A+ + VF++D+L +CR                ++ P   AG    EA L E L AV  +P  VKVG     D +R+  S+P +P F
Sbjct:  510 MRETLL-------GALARSAAARRAAGGADVAPSMVVGLDVEWRPFER-GASHTPAALLQVALRDTVFLVDLLALCRRSP------------LQLGPQPAAGDAATEAALCEVLAAVFCSPDAVKVGFYLAQDLERIRSSYPWLPLF 636          
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A2P6PGS1_ROSCH (Putative ribonuclease D n=3 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PGS1_ROSCH)

HSP 1 Score: 63.2 bits (152), Expect = 1.070e-6
Identity = 49/210 (23.33%), Postives = 83/210 (39.52%), Query Frame = 0
Query:  332 YLKMDSHEREGVTYVDSSEALREMAEFMREALIDPHRDAAGDIGSGSTRGSGLGRIEAESRLALAIDCEWRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCFRRVCGVINLIDVARNAASLKKIPPEEKGSLSRLSNLVLG 541
            YL++D    E + +VD  +AL   A  + EA +                              + +DCEWRP    G  +N VS+MQLA G+ VF+LD++ +     D                        +L+  L  + ++P ++K+G     D + L  S+  + CF     ++++  V +          E+ G LS L   +LG
Sbjct:  752 YLRLDELAVEDIIWVDQVDALHNAACHIEEAEV------------------------------IGLDCEWRPNYEKGGEENKVSIMQLASGKVVFILDLIKLFEDVPD------------------------VLDGCLTRIFQSPKILKLGYAFVYDARHLADSYGELNCFNHYQMLLDIQHVFK----------EQGGGLSGLVQKILG 897          
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: UPI0005C8D37C (uncharacterized protein LOC101291344 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005C8D37C)

HSP 1 Score: 60.8 bits (146), Expect = 5.540e-6
Identity = 38/145 (26.21%), Postives = 67/145 (46.21%), Query Frame = 0
Query:  397 IDCEWRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCFRRVCGVINLIDVARNAASLKKIPPEEKGSLSRLSNLVLG 541
            +DCEW+P    G  +N VS+MQLA G+ VF+LD++ +     D                        +L+E L  + ++P ++K+G     D + L  S+          GV+N  +  +    ++++  E+ G LS L+  +LG
Sbjct:  769 LDCEWKPSYVKGGEENKVSIMQLASGKMVFILDLIKLFEDVPD------------------------VLDECLTRIFQSPKILKLGYAFIYDARHLADSY----------GVLNCFNHYQMLLDIQQVFKEQGGGLSGLAQKILG 879          
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A150GDY3_GONPE (3'-5' exonuclease domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GDY3_GONPE)

HSP 1 Score: 60.5 bits (145), Expect = 7.540e-6
Identity = 52/160 (32.50%), Postives = 74/160 (46.25%), Query Frame = 0
Query:  159 SGDVHLVALVAGKKSLTRLLHFVELVPPMDVPAAAAGNQTYLGRKAWMRPGMTQD---------QPPRPVQVRLIMGKALVNRLGEQDARAVMGGVRQGQLLYVTGRPTPETRLRLFGDTSAARKNYASSLSENPDSSRGSVRSVVDDIYDLVCSSVRML 309
            S  V LVA+VA ++ + +LL F  LVP         G   YL RK W  P    D             PV+V+LIMGK L   LG   A+A++  V+ G ++ VTG      R++    + A   N AS+ S+   +          D+ D+VC SV +L
Sbjct:  168 SESVSLVAVVAQRRRIAKLLQFANLVPEHVPDLPPDGQAVYL-RKLWRNPDTGADCGGTTLAVAAGGLPVEVQLIMGKTLERNLGRDAAQALLDQVKAGCVVAVTG------RVQSHRPSPAGGVNGASADSQQQRA----------DVLDVVCHSVVVL 310          
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A812JDC3_9DINO (EXD3 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812JDC3_9DINO)

HSP 1 Score: 57.0 bits (136), Expect = 9.990e-5
Identity = 40/159 (25.16%), Postives = 67/159 (42.14%), Query Frame = 0
Query:  395 LAIDCEWRP-------------GTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCFRRVCGVINLIDVARNAASLKKIPPEEKGSLSRLSNLVL 540
            + +D EW+P               ++ A   P S +QLA  + + + D+L +  +++  A                      +L   L ++     +VK+G G + D QRL  S+PH+ CFRR+ G ++L +V   A          KG  + LS L L
Sbjct: 1641 IGLDTEWKPFLEKRGGMQKHRRSNQSAASMEPCSTLQLAAEDFIVIFDLLALAPAEKSTA---------------------QMLSTVLASLFCHRGIVKLGFGLQNDLQRLAASYPHLECFRRILGTLDLQEVLMEAR-------RSKGQTTGLSALCL 1771          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KYQ8_9PHAE2.970e-12456.753'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A7S1URP8_9STRA1.270e-1525.99Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A0G4EU09_VITBC3.610e-1342.11Uncharacterized protein n=6 Tax=Vitrella brassicaf... [more]
A0A2J7ZY56_9CHLO2.560e-924.38tRNA_edit domain-containing protein (Fragment) n=1... [more]
UPI001CFBDFF83.100e-925.00uncharacterized protein LOC123208888 isoform X1 n=... [more]
A0A2V0NYC6_9CHLO9.990e-730.61Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A2P6PGS1_ROSCH1.070e-623.33Putative ribonuclease D n=3 Tax=Rosa chinensis Tax... [more]
UPI0005C8D37C5.540e-626.21uncharacterized protein LOC101291344 n=1 Tax=Fraga... [more]
A0A150GDY3_GONPE7.540e-632.503'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A812JDC3_9DINO9.990e-525.16EXD3 protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 384..543
e-value: 1.3E-19
score: 72.1
NoneNo IPR availablePANTHERPTHR30411UNCHARACTERIZEDcoord: 395..504
NoneNo IPR availablePANTHERPTHR30411:SF1coord: 395..504
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 392..541

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19750contigH-elongata_contig19750:337..6297 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19750.5514.1mRNA_H-elongata_contig19750.5514.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19750 337..6297 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19750.5514.1 ID=prot_H-elongata_contig19750.5514.1|Name=mRNA_H-elongata_contig19750.5514.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=547bp
RKDRGRALSTEISRGRRSAVDAEVGPSEYQRRNGVVIEPPTAPAVVSDKA
TTDTTLSGERGFYLRDDGPGEQARSGIDNGKAATAAVMAAVAGDLNEIEI
AALVEGMETADGRRGNEDRAAAAEASAGDDSNSDGGSGSGTSGGVLSHLA
GTPTVDAFSGDVHLVALVAGKKSLTRLLHFVELVPPMDVPAAAAGNQTYL
GRKAWMRPGMTQDQPPRPVQVRLIMGKALVNRLGEQDARAVMGGVRQGQL
LYVTGRPTPETRLRLFGDTSAARKNYASSLSENPDSSRGSVRSVVDDIYD
LVCSSVRMLEDAPAVEPELVGNGDAWDGGRGYLKMDSHEREGVTYVDSSE
ALREMAEFMREALIDPHRDAAGDIGSGSTRGSGLGRIEAESRLALAIDCE
WRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAA
KEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMP
CFRRVCGVINLIDVARNAASLKKIPPEEKGSLSRLSNLVLGEFSYV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf