mRNA_H-elongata_contig19750.5514.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A6H5KYQ8_9PHAE (3'-5' exonuclease domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYQ8_9PHAE) HSP 1 Score: 405 bits (1042), Expect = 2.970e-124 Identity = 227/400 (56.75%), Postives = 275/400 (68.75%), Query Frame = 1
Query: 436 LSHLAGTPTVDAFSGDVHLVALVAGKKSLTRLLHFVELVPPMDVPAAAAGNQTYLGRKAWMRPGMTQDQPPRPVQVRLIMGKALVNRLGEQDARAVMGGVRQGQLLYVTGRPTPETRLRLF--GDTSAARKNYASSLSENPDSSRGSVRSVVDDIYDLVCSSVRMLEDAPAVEPELVGNGDAWDGGRGYLKMDSHEREGVTYVDSSEALREMAEFMREALID-PHRDAAGDIGSGSTRGSGLGRIEAESRLALAIDCEWRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCFRRVCGVINLIDVARNAASLKKIPPEEKGSLSRLSNLVLGE 1626
L+ AGTPTVDA GDVHLVA VAGK+SLTRLLHFV+LVPP A NQT L RKAWM PG T D+PP PV+V+LIMGK LV+RLG+Q+A M GV++GQLLY+TGRPTP+TR T+ + K+ ++ L + YDLVC SVRMLEDAP VEPELVG GD W GG YL+MD E V YVDS++ L+EM +F+R+ L+D P + SG R R ALA+DCEWRP AG P NPV L+QLA GER F++DMLHVCR K AA+A A +E +GL + EA+LEEALGAVL +P VVKVG+GPKADFQ L++S+PHMPCFRRVCGV+NL VA NA+SL+ P +EK SLSRL N+VLG+
Sbjct: 580 LARAAGTPTVDAIGGDVHLVATVAGKRSLTRLLHFVDLVPPAT-EATPVANQTCLVRKAWMVPGNTPDRPPTPVKVQLIMGKTLVDRLGQQEALVAMRGVKRGQLLYITGRPTPDTRKHHLDGAPTTDSNKDDSAKL----------------ETYDLVCCSVRMLEDAPLVEPELVGKGDEWTGGGDYLEMDLEES-AVVYVDSAKRLKEMGKFLRKTLLDVPAVEGGAKPPSGGDR---------PQRPALAVDCEWRPARVAGTPANPVCLLQLAAGERTFIVDMLHVCRPK-SAAVATTA----EEETASGLTKREALLEEALGAVLGSPGVVKVGLGPKADFQSLIRSYPHMPCFRRVCGVVNLCHVASNASSLRGKPADEKASLSRLCNVVLGK 947
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A7S1URP8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1URP8_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.270e-15 Identity = 105/404 (25.99%), Postives = 172/404 (42.57%), Query Frame = 1
Query: 481 DVHLVALVAGKKSLTRLLHFVELVPPMDVPAAAAGNQTYLGRKAWMRPGMTQDQPPRPVQVRLIMGKALVNRLGEQDARAVMGGVRQGQLLYVTGRPTPETR---------------LRLFGDTSAARKNYASSLSENPDSSRGSVRSVVDDIYDLVCSSVRMLEDAPAVEPELVGNGDAWDGGRGYLKMD---SHEREGVTYVDSSEALREMAEFMREALIDPHRDAAGDIGSGSTRGSGLGRIEAESRLALAIDCEWRPGTRAGAP--QNPVSLMQLAMG--ERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCFRRVCGVINLIDVARNAASLKKIPPEEK--GSLSRLSNLVL 1620
D+ ++ V+G + + R L F +L PP V +Q L ++ + R + V+LI GK L LG+ A + + GQLL V GR R ++ F AS + +S ++ S +R L+ A ++ PE+ D +L + S + VT VDS + ++E E + A ++A +I +GL R + IDCEW+P P PV +MQ++ ERVF+LD+ + RS +P E+E E++ +L + +KVG AD +RL S+PH+P FR+V GV+ + +AR + L KI ++ SL+RL+ ++
Sbjct: 28 DITVLGRVSGVRRMARRLVFCDLAPPDYVGEGTKQDQYDLPWRS--------GEDGRDMAVQLIAGKTLCKALGDVHGPAALKKFKPGQLLLVKGRTNVGNRDSLGSWIQKRSFDIVVQSFSILEHGGALLASKSKQERESPSLMIKKQKATKQMQSSSELRRLQLAASL-PEMGVGVD-------FLSLTDVFSQSMDPVTLVDSIDGVKEFREQLEAA-----KEAVENIDEAGASETGLNRT-----IMTGIDCEWKPSFMMPTPFEPQPVLVMQVSFQPLERVFILDLQVMLRSLLP------------PDEPMN--ELELGFSESMEVLLDSSKFLKVGFQLLADLRRLAGSYPHIPGFRQVNGVVEMAGIARKSLQLAKIRNSKQISTSLARLTEFLV 391
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A0G4EU09_VITBC (Uncharacterized protein n=6 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EU09_VITBC) HSP 1 Score: 84.0 bits (206), Expect = 3.610e-13 Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 436 LSHLAGTPTVDAFSGDVHLVALVAGKKSLTRLLHFVELVPPMDV--PAAAAGNQTYLGRKAWMRPGMTQDQPPRPVQVRLIMGKALVNRLGEQDARAVMGGVRQGQLLYVTGRP 771
+ +A PTVD FS +HLVA+VA K+ +++ L F ELVPP D A A Q RKAW + P + ++V+LI+G L+ RLGE A +M +R GQ +Y+TG P
Sbjct: 434 MERVARLPTVDVFSETIHLVAVVASKRMMSKRLVFAELVPPPDPYEDDAPASEQLCHSRKAWR----SVRDPSQCMEVQLIVGHTLIRRLGEDRATQLMRSLRPGQRVYITGIP 543
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A2J7ZY56_9CHLO (tRNA_edit domain-containing protein (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZY56_9CHLO) HSP 1 Score: 71.6 bits (174), Expect = 2.560e-9 Identity = 98/402 (24.38%), Postives = 156/402 (38.81%), Query Frame = 1
Query: 475 SGDVHLVALVAGKKSLTRLLHFVELVPPMDV----------PAAAAGNQTYLG---RKAWMRPGMTQDQPPRPVQVRLIMGKALVNRLGEQDARAVMGGVRQGQLLYVTGRPTPETRLRLFGDTSAARKNYASSLSENPDSSRGSVRSVVDDIYDLVCSSVRML--------------------EDAP-AVEPELV------------GNGDAWD-----GGRGYLKMDSHEREGVTYVDSSEALRE-------MAEFMREALIDPHRDAAGDIGSGSTRGSGLGRIEAESRLALAIDCEWRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCF 1506
SG V +VA+VA ++ + +LL FV LVP P G R+ W P P +V+LIMGK L + LG + A+A++ V+ G ++ V G +++ G AA++ + D+ DLVC S +L +DA A +P LV G+G+A GG + + G S+ RE EA+ H + G +G+ + +A S + +DCEW P R + VS++Q+A ++V+++D+L + + G A L ++L AP VVK+G D RL +S+P +PCF
Sbjct: 293 SGAVRMVAVVAQRRRIAKLLQFVVLVPEQGAXXXXXXXXXAPRREKGRPDGAAVSLRRLWRNP-----DTGAPAEVQLIMGKTLESNLGAEQAQALLNQVKVGCVVEVAG----TVQVQPPGAAPAAQQRH--------------------DVLDLVCYSAVVLHRNKGRFDQALHGSKHAGFGDDAEDAEQPHLVEAVRQEGTLRPLGSGEAPGEGAPVGGGPRSALPAASVSGAACHVSNGWQREPPIEGDVQLVATEEAVERMHSEILGGVGA-AVGPPAEAVPDARSAQVVGLDCEWSPFGRRQT-KTAVSILQVATRKQVYIVDLLAL-------------------VGDGGTPGAHAF-SRFLSSLLAAPHVVKLGFQLGGDLARLCESYPRLPCF 643
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: UPI001CFBDFF8 (uncharacterized protein LOC123208888 isoform X1 n=3 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CFBDFF8) HSP 1 Score: 70.9 bits (172), Expect = 3.100e-9 Identity = 38/152 (25.00%), Postives = 74/152 (48.68%), Query Frame = 1
Query: 1168 ESRLALAIDCEWRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCFRRVCGVINLIDVARNAASLKKIPPEEKGSLSRLSNLVLG 1623
E + +DCEW+P G+ N VS+MQ+A ++VF+LD++ +C+ D +L+ L +L++P ++K+G + D ++L S+ + CF+ ++++ +V + E +G LS L+ +LG
Sbjct: 383 EGCKVVGVDCEWKPNYEKGSKPNKVSIMQIASDKKVFILDLIKLCKDVPD------------------------VLDNCLTRILQSPGILKLGYNFQCDIKQLAHSYGELDCFKHYEMLLDIQNVFK----------EPRGGLSGLAKKILG 500
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A2V0NYC6_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NYC6_9CHLO) HSP 1 Score: 63.2 bits (152), Expect = 9.990e-7 Identity = 45/147 (30.61%), Postives = 68/147 (46.26%), Query Frame = 1
Query: 1075 MREALIDPHRDAAGDIGSGSTRGSGLGRIEAESRLALAIDCEWRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDP---AGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCF 1506
MRE L+ G + + G + + + +D EWRP R GA P +L+Q+A+ + VF++D+L +CR ++ P AG EA L E L AV +P VKVG D +R+ S+P +P F
Sbjct: 510 MRETLL-------GALARSAAARRAAGGADVAPSMVVGLDVEWRPFER-GASHTPAALLQVALRDTVFLVDLLALCRRSP------------LQLGPQPAAGDAATEAALCEVLAAVFCSPDAVKVGFYLAQDLERIRSSYPWLPLF 636
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A2P6PGS1_ROSCH (Putative ribonuclease D n=3 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PGS1_ROSCH) HSP 1 Score: 63.2 bits (152), Expect = 1.070e-6 Identity = 49/210 (23.33%), Postives = 83/210 (39.52%), Query Frame = 1
Query: 994 YLKMDSHEREGVTYVDSSEALREMAEFMREALIDPHRDAAGDIGSGSTRGSGLGRIEAESRLALAIDCEWRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCFRRVCGVINLIDVARNAASLKKIPPEEKGSLSRLSNLVLG 1623
YL++D E + +VD +AL A + EA + + +DCEWRP G +N VS+MQLA G+ VF+LD++ + D +L+ L + ++P ++K+G D + L S+ + CF ++++ V + E+ G LS L +LG
Sbjct: 752 YLRLDELAVEDIIWVDQVDALHNAACHIEEAEV------------------------------IGLDCEWRPNYEKGGEENKVSIMQLASGKVVFILDLIKLFEDVPD------------------------VLDGCLTRIFQSPKILKLGYAFVYDARHLADSYGELNCFNHYQMLLDIQHVFK----------EQGGGLSGLVQKILG 897
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: UPI0005C8D37C (uncharacterized protein LOC101291344 n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0005C8D37C) HSP 1 Score: 60.8 bits (146), Expect = 5.540e-6 Identity = 38/145 (26.21%), Postives = 67/145 (46.21%), Query Frame = 1
Query: 1189 IDCEWRPGTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCFRRVCGVINLIDVARNAASLKKIPPEEKGSLSRLSNLVLG 1623
+DCEW+P G +N VS+MQLA G+ VF+LD++ + D +L+E L + ++P ++K+G D + L S+ GV+N + + ++++ E+ G LS L+ +LG
Sbjct: 769 LDCEWKPSYVKGGEENKVSIMQLASGKMVFILDLIKLFEDVPD------------------------VLDECLTRIFQSPKILKLGYAFIYDARHLADSY----------GVLNCFNHYQMLLDIQQVFKEQGGGLSGLAQKILG 879
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A150GDY3_GONPE (3'-5' exonuclease domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GDY3_GONPE) HSP 1 Score: 60.5 bits (145), Expect = 7.540e-6 Identity = 52/160 (32.50%), Postives = 74/160 (46.25%), Query Frame = 1
Query: 475 SGDVHLVALVAGKKSLTRLLHFVELVPPMDVPAAAAGNQTYLGRKAWMRPGMTQD---------QPPRPVQVRLIMGKALVNRLGEQDARAVMGGVRQGQLLYVTGRPTPETRLRLFGDTSAARKNYASSLSENPDSSRGSVRSVVDDIYDLVCSSVRML 927
S V LVA+VA ++ + +LL F LVP G YL RK W P D PV+V+LIMGK L LG A+A++ V+ G ++ VTG R++ + A N AS+ S+ + D+ D+VC SV +L
Sbjct: 168 SESVSLVAVVAQRRRIAKLLQFANLVPEHVPDLPPDGQAVYL-RKLWRNPDTGADCGGTTLAVAAGGLPVEVQLIMGKTLERNLGRDAAQALLDQVKAGCVVAVTG------RVQSHRPSPAGGVNGASADSQQQRA----------DVLDVVCHSVVVL 310
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Match: A0A812JDC3_9DINO (EXD3 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812JDC3_9DINO) HSP 1 Score: 57.0 bits (136), Expect = 9.990e-5 Identity = 40/159 (25.16%), Postives = 67/159 (42.14%), Query Frame = 1
Query: 1183 LAIDCEWRP-------------GTRAGAPQNPVSLMQLAMGERVFVLDMLHVCRSKRDAAIAAVAGAAAKEIDPAGLVEMEAILEEALGAVLRAPWVVKVGVGPKADFQRLMQSFPHMPCFRRVCGVINLIDVARNAASLKKIPPEEKGSLSRLSNLVL 1620
+ +D EW+P ++ A P S +QLA + + + D+L + +++ A +L L ++ +VK+G G + D QRL S+PH+ CFRR+ G ++L +V A KG + LS L L
Sbjct: 1641 IGLDTEWKPFLEKRGGMQKHRRSNQSAASMEPCSTLQLAAEDFIVIFDLLALAPAEKSTA---------------------QMLSTVLASLFCHRGIVKLGFGLQNDLQRLAASYPHLECFRRILGTLDLQEVLMEAR-------RSKGQTTGLSALCL 1771 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19750.5514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19750.5514.1 >prot_H-elongata_contig19750.5514.1 ID=prot_H-elongata_contig19750.5514.1|Name=mRNA_H-elongata_contig19750.5514.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=547bp RKDRGRALSTEISRGRRSAVDAEVGPSEYQRRNGVVIEPPTAPAVVSDKAback to top mRNA from alignment at H-elongata_contig19750:337..6297- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19750.5514.1 ID=mRNA_H-elongata_contig19750.5514.1|Name=mRNA_H-elongata_contig19750.5514.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5961bp|location=Sequence derived from alignment at H-elongata_contig19750:337..6297- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19750:337..6297- >mRNA_H-elongata_contig19750.5514.1 ID=mRNA_H-elongata_contig19750.5514.1|Name=mRNA_H-elongata_contig19750.5514.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3282bp|location=Sequence derived from alignment at H-elongata_contig19750:337..6297- (Himanthalia elongata Himel1 dioecious)back to top |