prot_H-elongata_contig197343.5505.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig197343.5505.1
Unique Nameprot_H-elongata_contig197343.5505.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length69
Homology
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 4.930e-32
Identity = 56/61 (91.80%), Postives = 60/61 (98.36%), Query Frame = 0
Query:    3 PSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 63
            P+DYP+RVQPNQL+VDM+KEVVF PINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG
Sbjct:  521 PADYPRRVQPNQLFVDMEKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 581          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 7.130e-20
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0
Query:    6 YPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 63
            YPK   P+Q+ VDMD+EVV  PINGQPVP SIHTIKNV  P+PDNH  YLRINFF  G
Sbjct:  330 YPKDTMPHQIKVDMDREVVLCPINGQPVPFSIHTIKNVVMPEPDNHSFYLRINFFAPG 387          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A7S2H505_9STRA (FACT complex subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H505_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.230e-13
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    5 DYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 63
            +YP     N+++VDMDKEVVF+P+NGQPVP  I T+KNV  P+ D    YLRINF+  G
Sbjct:   81 EYPSGASMNRIFVDMDKEVVFLPVNGQPVPFHISTVKNVVMPEEDKAA-YLRINFYIPG 138          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A7S4A2J0_9STRA (FACT complex subunit (Fragment) n=8 Tax=cellular organisms TaxID=131567 RepID=A0A7S4A2J0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.070e-12
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 0
Query:    1 QHPSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSGTVRER 68
            Q   +YP+ +  +++YVDM  +V+F PING  VP  I  IKN  QPDPD    YLR+NFFT G    +
Sbjct:  524 QSAGEYPRDLPSSEVYVDMQGQVLFAPINGSQVPFHISMIKNAVQPDPDRTATYLRLNFFTPGQTASK 591          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A7S0ZHH3_9RHOD (FACT complex subunit (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZHH3_9RHOD)

HSP 1 Score: 66.2 bits (160), Expect = 2.360e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 0
Query:    3 PSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINF 59
            PS YP  ++P Q++VDMD EVVF+PING PVP  + TIK+  + D  +H  Y+RINF
Sbjct:    8 PSKYPVSIRPRQMFVDMDAEVVFVPINGIPVPFHVSTIKSANKSDEGSHT-YVRINF 63          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: W7TT12_9STRA (FACT complex subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT12_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.340e-11
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 0
Query:    6 YPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSG 63
            YP+ ++ NQ++VDM++E V +PI+G  VP  I TIKNV QP+PD    YLRINF++ G
Sbjct:  593 YPRDMRANQVFVDMEREAVLLPIHGMHVPFHIATIKNVVQPEPDAAA-YLRINFYSPG 649          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: D8LVG5_BLAHO (FACT complex subunit n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LVG5_BLAHO)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8
Identity = 26/59 (44.07%), Postives = 41/59 (69.49%), Query Frame = 0
Query:    3 PSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFT 61
            P+ YP  ++ +Q+YVD + EV+F+PI+G PVP S+HT++ V+  +   +  Y RINF T
Sbjct:  343 PAQYPPEMRRDQIYVDTENEVLFLPIHGVPVPFSVHTVRTVSMTEEGGYG-YFRINFHT 400          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A196SDC4_BLAHN (FACT complex subunit n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SDC4_BLAHN)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    4 SDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSGT 64
            + YP  ++ +Q++VD+D EV+F+PI+G PVP SIHTIK V+  + D    Y R+NF +  T
Sbjct:  535 AQYPPELKRDQIFVDVDHEVLFVPIHGLPVPFSIHTIKTVSMTE-DGGYGYFRVNFHSPQT 594          
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Match: A0A3D5JE00_9DELT (SPT16 domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D5JE00_9DELT)

HSP 1 Score: 51.6 bits (122), Expect = 2.240e-7
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 0
Query:   13 NQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPD 49
            +++Y+D++ + VF PING P+P  I TIKNV QPDPD
Sbjct:    4 DEIYIDIEGQSVFAPINGIPIPFHISTIKNVVQPDPD 40          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197343.5505.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FPY1_ECTSI4.930e-3291.80FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z130_9STRA7.130e-2070.69FACT complex subunit n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2H505_9STRA2.230e-1355.93FACT complex subunit n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4A2J0_9STRA1.070e-1247.06FACT complex subunit (Fragment) n=8 Tax=cellular o... [more]
A0A7S0ZHH3_9RHOD2.360e-1154.39FACT complex subunit (Fragment) n=1 Tax=Timspurcki... [more]
W7TT12_9STRA3.340e-1153.45FACT complex subunit n=2 Tax=Monodopsidaceae TaxID... [more]
D8LVG5_BLAHO1.260e-844.07FACT complex subunit n=1 Tax=Blastocystis hominis ... [more]
A0A196SDC4_BLAHN1.260e-845.90FACT complex subunit n=1 Tax=Blastocystis sp. subt... [more]
A0A3D5JE00_9DELT2.240e-756.76SPT16 domain-containing protein n=1 Tax=Deltaprote... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013953FACT complex subunit Spt16 domainPFAMPF08644SPT16coord: 15..65
e-value: 2.1E-14
score: 54.0
NoneNo IPR availableGENE3D2.30.29.210coord: 1..68
e-value: 4.0E-21
score: 77.0
NoneNo IPR availablePANTHERPTHR13980:SF15FACT COMPLEX SUBUNIT SPT16coord: 2..65
IPR040258FACT complex subunit Spt16PANTHERPTHR13980CDC68 RELATEDcoord: 2..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197343contigH-elongata_contig197343:563..769 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197343.5505.1mRNA_H-elongata_contig197343.5505.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig197343 563..769 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig197343.5505.1 ID=prot_H-elongata_contig197343.5505.1|Name=mRNA_H-elongata_contig197343.5505.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
QHPSDYPKRVQPNQLYVDMDKEVVFMPINGQPVPLSIHTIKNVTQPDPDN
HCHYLRINFFTSGTVRER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013953FACT_Spt16
IPR040258Spt16