prot_H-elongata_contig19595.5461.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19595.5461.1
Unique Nameprot_H-elongata_contig19595.5461.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length134
Homology
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.300e-28
Identity = 55/134 (41.04%), Postives = 88/134 (65.67%), Query Frame = 0
Query:    1 MQEELKSYDVTGNFTPMLN-PEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 133
            M  E++     G FT     P G NV+  +W F WK +EIG+++K KARLVA+ F Q Y VD+ E F+ + + +S +++  +A +Y  +  HWD++Q+FV+++ DY+ F+KLP G  + SGKVV+L +++Y LK
Sbjct:    1 MSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADEIGKIVKAKARLVAKGFKQKYGVDYVETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELK 134          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A6H5JUE2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE2_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.180e-28
Identity = 53/133 (39.85%), Postives = 83/133 (62.41%), Query Frame = 0
Query:    1 MQEELKSYDVTGNFTPMLN-PEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSL 132
            M++++  +D TG F  +   PEG   +  KW FSWK NE G ++ +KAR+VAR FS+   +DF    ++ PS +S+K +  VA E G++  HWDVKQ+++  K   + +++ P G  + SGKVVK+ R +Y L
Sbjct:   35 MKKDIDGHDKTGTFPKVKELPEGRKAIGSKWVFSWKTNEKGLIVDSKARMVARGFSRIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLTEEIYLRFPEGCGSMSGKVVKVERALYGL 167          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A6H5JVQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ8_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 7.030e-27
Identity = 59/134 (44.03%), Postives = 82/134 (61.19%), Query Frame = 0
Query:    1 MQEELKSYDVTGNFTPMLN-PEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 133
            M+EE   +  TG F+ +   PEG   V  KW F+WK N+ G+++K KARLVAR FSQ+  VD+    +  PS +S+K++  VANE   +  HWDVKQ+F   K D D F++LP+G   +S  V K  R +Y LK
Sbjct:  547 MREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIVKFKARLVARGFSQTPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHTVAKAERAIYGLK 680          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A8J9VJX7_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9VJX7_BRAAE)

HSP 1 Score: 102 bits (254), Expect = 1.140e-22
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 0
Query:    1 MQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 133
            + +E+ S  +   +T +  PE  N+V  KW FS KNNE G  +K KARLVA+ FSQ Y +D++E F      SS + +   AN++     H DVK +F+  K   + ++K+P G  + + +V KL + +Y LK
Sbjct:  913 ISDEINSLLINNTWTLVQKPENKNIVDCKWVFSLKNNEFGNPIKYKARLVAKGFSQKYHIDYNETFAPVARISSFRFVLAFANQHCLLVHHMDVKTAFLNGKLKEEIYMKVPEGIKSNNNQVCKLNKALYGLK 1045          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A0K8TZB9_BACLA (Copia protein n=3 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8TZB9_BACLA)

HSP 1 Score: 96.7 bits (239), Expect = 1.200e-20
Identity = 45/133 (33.83%), Postives = 77/133 (57.89%), Query Frame = 0
Query:    1 MQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 133
            +Q+EL+S+     ++ +  P+  N+V  KW F+ K +E G +++ KARLVAR F+Q Y  D+DE F      SS +++  ++N+YG +  H DVK +F+      + ++++P G       V KL + +Y LK
Sbjct:  862 IQDELQSHSENNTWSLVAKPDKKNIVDCKWVFTIKQDECGNLVRYKARLVARGFTQEYLTDYDETFAPVARISSFRLMLALSNQYGLKMHHMDVKTAFLNGVLKEEIYMRVPEGLVHNDNTVCKLNKAIYGLK 994          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A034VP82_BACDO (Copia protein n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034VP82_BACDO)

HSP 1 Score: 94.4 bits (233), Expect = 7.710e-20
Identity = 50/134 (37.31%), Postives = 74/134 (55.22%), Query Frame = 0
Query:    1 MQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSG-GAAESGKVVKLTRTMYSLK 133
            +Q+EL S+ V   +  +  P   N+V  KW FS K +E G +LK KARLVAR F+Q Y +D+DE F      SS + +   +N+Y     H DVK +F+      + ++K+P G    +  KV KL + +Y LK
Sbjct:  874 IQDELNSHFVNNTWCLVQRPMDKNIVDCKWVFSLKQDENGNLLKYKARLVARGFTQEYMMDYDETFAPVARISSFRFLLAFSNQYNLLIHHMDVKTAFLYGTLKDEIYMKVPKGLNQYDGNKVCKLNKAIYGLK 1007          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A5N6Q5P1_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q5P1_9ASTR)

HSP 1 Score: 93.6 bits (231), Expect = 1.260e-19
Identity = 44/133 (33.08%), Postives = 74/133 (55.64%), Query Frame = 0
Query:    1 MQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 133
            MQ EL S + T  +T    P     + +KW F  K +  G+++K KARLVA+ + Q + +DFDE+F       +V++I  +A+  G +  H DVK  F+  +   + ++  P G   ++GKV KL++ +Y L+
Sbjct:  145 MQAELNSINKTNTWTLTKLPSDHKAIGLKWVFKTKRDANGEIIKHKARLVAKGYVQQHGIDFDEVFAPVARIETVRLIFALASYNGWEVHHLDVKSDFLHGELKEEVYVSQPEGFVKDAGKVYKLSKALYGLR 277          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A5K1B577_9MAGN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1B577_9MAGN)

HSP 1 Score: 89.4 bits (220), Expect = 2.490e-19
Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = 0
Query:    1 MQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGK--VVKLTRTMYSLK 133
            M +E++S +    +T    P G+  + +KW F  K N  G+V+K KARLVA+ + Q   +DFDE+F       +V+VI  VA   G Q  H DVK +F+  + + + ++  P G   ++ +  V+KL++ +Y L+
Sbjct:    1 MAKEIESIEKNSTWTLTTLPIGTKAIGLKWVFKLKKNSDGEVIKHKARLVAKGYVQRQGIDFDEVFAPVARLDTVRVILAVAANRGWQVHHLDVKSAFLNGELEEEVYVTQPEGFTEKNKEHMVLKLSKALYGLR 135          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A438IM12_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IM12_VITVI)

HSP 1 Score: 90.5 bits (223), Expect = 1.630e-18
Identity = 47/135 (34.81%), Postives = 77/135 (57.04%), Query Frame = 0
Query:    1 MQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAA--ESGKVVKLTRTMYSLK 133
            +QEE+++ +  G +     PEG   V  KW F+ K+N  G + + KA+LVA+ F+QSY +D++EIF      +S+KV+  VA          DVK +F+  + + + ++K+P        SGKV KL +++Y LK
Sbjct:  301 VQEEIQALEKNGTWEISELPEGKRPVGCKWIFTMKHNPDGSINRFKAQLVAKGFTQSYGIDYEEIFAPVAKLNSIKVLLSVAVNLDWNLHQLDVKNAFLNGELEEEVYMKIPPSMETPENSGKVCKLRKSLYGLK 435          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A182G9G9_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G9G9_AEDAL)

HSP 1 Score: 90.1 bits (222), Expect = 1.930e-18
Identity = 44/133 (33.08%), Postives = 75/133 (56.39%), Query Frame = 0
Query:    1 MQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 133
            M+EE+ S +    +  +  P G   +  +W+F  K NEIGQ ++ KARLVA+ FSQ +  DFDE+F       +++ +  +A+  G    H D+K +++  +   D ++K P G + ++G V  L R++Y LK
Sbjct:   13 MEEEIASLNEHRTWELVPLPPGKKAIGCRWTFKKKENEIGQTVRYKARLVAQGFSQQFGSDFDEVFAPVVRQPTLRTMLTIASREGMLVKHLDIKTAYLYAELKEDIYMKQPPGFSEDNGLVCHLRRSIYGLK 145          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9B2_9PHAE1.300e-2841.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JUE2_9PHAE3.180e-2839.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVQ8_9PHAE7.030e-2744.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J9VJX7_BRAAE1.140e-2236.84Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
A0A0K8TZB9_BACLA1.200e-2033.83Copia protein n=3 Tax=Bactrocera latifrons TaxID=1... [more]
A0A034VP82_BACDO7.710e-2037.31Copia protein n=1 Tax=Bactrocera dorsalis TaxID=27... [more]
A0A5N6Q5P1_9ASTR1.260e-1933.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5K1B577_9MAGN2.490e-1933.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438IM12_VITVI1.630e-1834.81Retrovirus-related Pol polyprotein from transposon... [more]
A0A182G9G9_AEDAL1.930e-1833.08Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 19..133
e-value: 3.9E-19
score: 69.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19595contigH-elongata_contig19595:6041..6442 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19595.5461.1mRNA_H-elongata_contig19595.5461.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19595 6026..6442 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19595.5461.1 ID=prot_H-elongata_contig19595.5461.1|Name=mRNA_H-elongata_contig19595.5461.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLV
ARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVR
TKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2