prot_H-elongata_contig1957.5454.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig1957.5454.1
Unique Nameprot_H-elongata_contig1957.5454.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length266
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1957.5454.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 35..59
e-value: 55.0
score: 7.2
coord: 107..131
e-value: 21.0
score: 10.6
coord: 83..106
e-value: 210.0
score: 2.4
coord: 11..34
e-value: 240.0
score: 2.0
coord: 227..251
e-value: 55.0
score: 7.2
coord: 155..179
e-value: 81.0
score: 5.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 77..173
e-value: 1.4E-32
score: 114.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..76
e-value: 1.9E-22
score: 81.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 174..266
e-value: 4.6E-29
score: 103.1
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 84..98
e-value: 1.3
score: 9.2
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 14..35
e-value: 1.3
score: 9.9
coord: 134..155
e-value: 1.3
score: 9.9
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 74..175
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 2..80
NoneNo IPR availablePANTHERPTHR27008:SF356coord: 32..128
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 124..224
coord: 32..128
NoneNo IPR availablePANTHERPTHR27008:SF356coord: 2..80
NoneNo IPR availablePANTHERPTHR27008:SF356coord: 124..224
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 170..266
NoneNo IPR availablePANTHERPTHR27008:SF356coord: 74..175
NoneNo IPR availablePANTHERPTHR27008:SF356coord: 170..266
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 9..265

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1957contigH-elongata_contig1957:876..15125 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1957.5454.1mRNA_H-elongata_contig1957.5454.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig1957 876..15125 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig1957.5454.1 ID=prot_H-elongata_contig1957.5454.1|Name=mRNA_H-elongata_contig1957.5454.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
TGPISNELWILTALTTLYLNGNQLSGPISNEVGKLTALAVLRLDGNQLSG
PIPNELGKLTALTVIRFDGNQLSGPIPNELGKLTVLTVLDLASNQLSGPI
PKELGKLTALTVLRLDGNQLSGPIPNELGKLTALTTLSLFNNQLIGPIPN
ELEKLTALTTLSLFSNQLSGPIPNELGKLTALTILRLDDNRLSGPISNEL
GKLTALQVLYLFRNELSGPIPNELGKLTALTTISLSSNKLSGPIPSELGK
LTALTVLPLDDNRLNG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt