prot_H-elongata_contig19545.5450.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19545.5450.1
Unique Nameprot_H-elongata_contig19545.5450.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length887
Homology
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BLAST of mRNA_H-elongata_contig19545.5450.1 vs. uniprot
Match: A0A6H5K1P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P9_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.910e-25
Identity = 119/292 (40.75%), Postives = 136/292 (46.58%), Query Frame = 0 
Query:  596 SLPDSPGSPTDISLAMQNGELSAAARVFVPTNISPAKPPASAASVGGTPGRHPGVGGVGIAVRTISRETPPHLPLTAGSSPEVRSSPVNGVGGGLGL-------------PLTGGAFGVSWGAMGDAGTGVGVVRKGSANALSPAADCDAEASRKSLWGSLGTGAGASAVPASGQAIWGSGSLLDSSLSVAGGVKN---------GDSLSLLLAPSTGSPPQPPAEAASI---SFSPTLPLSSWGVDNVGGDAVGGAAGDEFAGGLRASLRGLQLDDADTDLAVGRKASQQQ 862
            S P SPG   DISLA+QNGELSAAA+ FVP NISPAKP  S    GGTP   PG      A R+   ETP  +   A + P                             PL   AFG SWG+MG                              +LWGSLG   G + VP SGQAIWGS SLLDS     G             GD LSLLL PS  S  Q PA+A S+   S S  L L+SWGV   GG   G  AGDEF GGL +SL GL +DD+ + +  G+   Q Q
Sbjct: 1333 SSPGSPGDADDISLAVQNGELSAAAQEFVP-NISPAKPATSTG--GGTPVSRPGA----AAARSAGVETPTAVARAAQTPPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLADVAFGSSWGSMGXX-----XXXXXXXXXXXXXXXXXXXXXXSNLWGSLGIDVGGAGVPPSGQAIWGSSSLLDSVGGDGGXXXXXXXXXXAIAGDGLSLLLGPSNVSTVQAPADATSLPPFSSSCPLDLASWGVGRRGG--AGALAGDEFVGGLASSLSGLSMDDSASGVLGGKAGEQPQ 1610
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19545.5450.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1P9_9PHAE6.910e-2540.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 136..229
NoneNo IPR availablePANTHERPTHR10019:SF10coord: 514..877
coord: 180..546
IPR006939SNF5/SMARCB1/INI1PANTHERPTHR10019SNF5coord: 514..877
IPR006939SNF5/SMARCB1/INI1PANTHERPTHR10019SNF5coord: 180..546

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19545contigH-elongata_contig19545:1415..4754 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19545.5450.1mRNA_H-elongata_contig19545.5450.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19545 517..5344 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19545.5450.1 ID=prot_H-elongata_contig19545.5450.1|Name=mRNA_H-elongata_contig19545.5450.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=887bp
MVTARQTAVMSTPPGKPIQGLSPNRFPMLGSVGLGAGAVGGLNNKDKAIP
RPPVALIPVGKGLAQVSSRGAPESTGQRSVIGVVGGGLGGIVLRSAVVGG
DNGSNSVAGRAPSPGGTRGCGESGGQSKGNAVAPQQQQQQQQQQQQQQQH
QQQRRQQQQQQQQQAHNQQQKQQQQQHQQQQQQQQQKQHQQQQQKQQQQQ
RQQQQQRQRQQQQQQRQRLQQQQQQQHQQLSISGRQAGDIAGRGGGNPPP
PPPHHQHHQHHQQRHQHHQHVHSKAGSMPYGNSGHGVSNGGGNDGGGGRA
TGAGGTRAGPYPPGVGRGLVGPMPGFSTHGPHPAPPPGTPMGIPSMAVPP
HVGHMPLVGQPLLFPGYRHPQPGTNHAPLQPPRGPRCAPPPHGYGPSSPM
GTPAGLPAQQPHGSVHHAEWAARQRAATVATTGWTNNATVPVPGAGQGGP
RGGPRLHPHALQYQHTQRHPSGGASSHTTGGQVPWAETWGVISSPRQGGL
TGTPEGGVPVVSLGLAHQQQHQQQRQRSYSDHSHQLHHDYQRQRQNSASA
APCAAGTPPSTTVVAKMMVSSPAPVPAPTPGRVAESTRRASGSPLSLPDS
PGSPTDISLAMQNGELSAAARVFVPTNISPAKPPASAASVGGTPGRHPGV
GGVGIAVRTISRETPPHLPLTAGSSPEVRSSPVNGVGGGLGLPLTGGAFG
VSWGAMGDAGTGVGVVRKGSANALSPAADCDAEASRKSLWGSLGTGAGAS
AVPASGQAIWGSGSLLDSSLSVAGGVKNGDSLSLLLAPSTGSPPQPPAEA
ASISFSPTLPLSSWGVDNVGGDAVGGAAGDEFAGGLRASLRGLQLDDADT
DLAVGRKASQQQEQQRNLFLDKSSSAPDIQGDMSWS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006939SNF5