prot_H-elongata_contig195254.5442.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig195254.5442.1
Unique Nameprot_H-elongata_contig195254.5442.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length208
Homology
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A8F0FAT9_9PHAE (Ribosomal protein L4 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT9_9PHAE)

HSP 1 Score: 368 bits (945), Expect = 4.540e-128
Identity = 193/208 (92.79%), Postives = 201/208 (96.63%), Query Frame = 0
Query:    1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLKT 208
            MSLEKILTFPIKLLTGE+SGDN TLTLKSKELSNTSNYIIHRAYLTQ +NERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPK KLYSNKINRKEWQLGLRNLL+AKQKDI IINNFSS +YKTNDI+KALKVFNIK+FEKTLIIVPKIDEKLLK+TRNIKT+KLIVANNLNI QIL AKNLFITKDSLKT
Sbjct:    1 MSLEKILTFPIKLLTGEESGDNITLTLKSKELSNTSNYIIHRAYLTQLYNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKPKLYSNKINRKEWQLGLRNLLIAKQKDITIINNFSSTNYKTNDIIKALKVFNIKIFEKTLIIVPKIDEKLLKSTRNIKTIKLIVANNLNIKQILLAKNLFITKDSLKT 208          
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A0R6LUU1_UNDPI (50S ribosomal protein L4, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUU1_UNDPI)

HSP 1 Score: 313 bits (802), Expect = 2.760e-106
Identity = 159/208 (76.44%), Postives = 184/208 (88.46%), Query Frame = 0
Query:    1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLKT 208
            M+L+KILTFP+K+LTGE+SGD  TLTLK KE +NT NY+I RAYL QR NERQG ANTLTR+EV+GGGRKPW+QKGTGRARAGS  SPLWKGGGVSFGPK K YS+KINRKEWQL LR+LL+AKQKDI I++NF+ ++YKT++I+K L  FNI LFE TLI+VPKIDEKLLK+TRNIKT+KLIVANNLN+ QIL AKNL ITKDSLKT
Sbjct:    1 MALQKILTFPVKILTGEESGDEITLTLKLKEATNTINYVIQRAYLAQRSNERQGTANTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKFYSSKINRKEWQLSLRSLLIAKQKDITIVDNFNFLEYKTSNIIKVLNTFNINLFENTLIVVPKIDEKLLKSTRNIKTIKLIVANNLNLKQILLAKNLLITKDSLKT 208          
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A8F0F722_AKKLU (Ribosomal protein L4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F722_AKKLU)

HSP 1 Score: 311 bits (796), Expect = 2.260e-105
Identity = 156/208 (75.00%), Postives = 188/208 (90.38%), Query Frame = 0
Query:    1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLKT 208
            M L+KILTFPIKLLTG++SGD  TLTLKSKE+++ SNY+I RAYLTQR+NERQG ANTLTR+EV+GGGRKPW+QKGTGRARAGS +SPLWKGGGVSFGPK KLYSNKINRKEWQL LR+LL+AKQKDI +I+N + ++YKT++I+K L  F+I LF+ TL+IVPKI++KLLK+TRNIKT+K+IVANNLN+ QIL AKNL +TKDSLKT
Sbjct:    1 MILQKILTFPIKLLTGKESGDKITLTLKSKEITDKSNYVIQRAYLTQRYNERQGTANTLTRAEVKGGGRKPWRQKGTGRARAGSNTSPLWKGGGVSFGPKPKLYSNKINRKEWQLSLRSLLIAKQKDITVIDNINPLEYKTDNIIKTLNSFDINLFDNTLLIVPKIEDKLLKSTRNIKTIKVIVANNLNLKQILLAKNLLVTKDSLKT 208          
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A8F0FA21_9PHAE (Ribosomal protein L4 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FA21_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 1.850e-104
Identity = 154/208 (74.04%), Postives = 185/208 (88.94%), Query Frame = 0
Query:    1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLKT 208
            M L+K++TFPIK +TG++SGD  TL LK K++  T+NY+I RAYLTQR NERQG ANTLTR+EV+GGGRKPWKQKGTGRARAGS +SPLWKGGGVSFGPK KLYSNKINRKEWQL LR+LL+AK+KDI ++ NF+ +DYKTNDI+K L+ FNI LFE TLIIVPKI+EKL+K+T+NIKT+K++VANNLN+ QIL A+NLFITKDSLKT
Sbjct:    1 MILQKLITFPIKSITGKESGDKITLNLKLKDVVTTNNYVIQRAYLTQRLNERQGTANTLTRAEVKGGGRKPWKQKGTGRARAGSNTSPLWKGGGVSFGPKPKLYSNKINRKEWQLSLRSLLVAKEKDITVLENFNLLDYKTNDIIKILQSFNINLFENTLIIVPKIEEKLIKSTKNIKTIKVLVANNLNLKQILLAQNLFITKDSLKT 208          
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: D1GJT1_FUCVE (50S ribosomal protein L4, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJT1_FUCVE)

HSP 1 Score: 282 bits (722), Expect = 4.140e-94
Identity = 145/207 (70.05%), Postives = 175/207 (84.54%), Query Frame = 0
Query:    1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLK 207
            M  EK LTFPIKLLTG +S D  TLTLK K+ + T+NY+IHRAYLTQR NERQG A+TLTR+EVRGGGRKP +QKG GRARAGS  SPLWKGGGVSFGPK KLYSNKINRKEW+LGLR+LL++KQ +III++N +  +YKT +I+K LK+FNI L EKTL I+PKI++ LL++T NIKT+KL +A+NLN+ QIL AKNL +TKDSLK
Sbjct:    1 MISEKTLTFPIKLLTGNESKDKITLTLKVKDANETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPLRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIVDNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIEKNLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLK 207          
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A8F0JXJ6_9PHAE (Ribosomal protein L4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXJ6_9PHAE)

HSP 1 Score: 275 bits (702), Expect = 5.230e-91
Identity = 142/207 (68.60%), Postives = 174/207 (84.06%), Query Frame = 0
Query:    1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLK 207
            M  EKILTFPIK LTG +SG    + LK  E +NTSNYII RAYLTQR+NERQG ANTLTR+EVRGGGRKPW+QKGTG+ARAGS +SPLW+ GGVSFGPK K YSNKINRKEWQLGLRNLL+ KQ +I+++N+F+ ++++T  I ++L+ F+IKLFE TL IV K+++ LLKAT NIK +K+++ANNLNI QILFAKNLFIT+ SLK
Sbjct:    1 MVSEKILTFPIKDLTGAESGKKIKVILKLTEQNNTSNYIIQRAYLTQRYNERQGTANTLTRAEVRGGGRKPWRQKGTGKARAGSNTSPLWRNGGVSFGPKPKEYSNKINRKEWQLGLRNLLIKKQNNIVVLNDFNFVNFRTKTIKQSLETFDIKLFENTLFIVSKLEKDLLKATCNIKNIKVLLANNLNIKQILFAKNLFITETSLK 207          
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A141BSP0_9PHAE (50S ribosomal protein L4, chloroplastic n=13 Tax=Sargassum TaxID=3015 RepID=A0A141BSP0_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 6.660e-88
Identity = 141/207 (68.12%), Postives = 172/207 (83.09%), Query Frame = 0
Query:    1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLK 207
            M  +KILTF IK L G+   D TTL+LK KEL++T+NY+I RAYLTQR NERQG ANTLTR+EVRGGGRKPW+QKG GRARAGS +SPLWKGGGVSFGPK KLY NKINRKEW+LGLRNLL+AK+K+I +I N S  +YKT +I+K L+ F+I L + TLII+P I+++LL++T NIKT+KL +ANNLN+ QIL AKNL + KDSLK
Sbjct:    1 MVSKKILTFTIKSLKGDT--DKTTLSLKVKELNDTNNYVIQRAYLTQRLNERQGTANTLTRAEVRGGGRKPWRQKGMGRARAGSNTSPLWKGGGVSFGPKPKLYLNKINRKEWKLGLRNLLVAKEKNITVIENISITEYKTKNIIKILEDFSINLAKDTLIILPTIEKELLRSTSNIKTIKLTLANNLNLKQILLAKNLLVIKDSLK 205          
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A8E6D2Q2_9PHAE (50S ribosomal protein L4, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D2Q2_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 8.190e-78
Identity = 130/208 (62.50%), Postives = 163/208 (78.37%), Query Frame = 0
Query:    1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSN-TSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLK 207
            MS EK L F +K L+GE+S D T +TLKSK+ +  T NY+IHRA+LTQR NERQG ANTLTRSEVRGGGRKPW+QKGTGRARAGS +SPLWKGGGVSFGPK K++SNKINRKE +L LR+LL AK+++II+ NN +    KT+ + K L    I L E  LI+VPKI+  L K+ +NI+T+++ +ANNLNI QIL AK +FI K+SL+
Sbjct:    1 MSSEKTLIFSVKDLSGEESKDTTAITLKSKKKNEATDNYLIHRAFLTQRHNERQGTANTLTRSEVRGGGRKPWRQKGTGRARAGSNTSPLWKGGGVSFGPKPKIFSNKINRKERKLALRSLLFAKRENIIVANNLNYTTCKTSLLKKNLDTLGIDLRENVLIVVPKIERNLFKSAQNIRTIRVTMANNLNIRQILIAKYIFIAKESLQ 208          
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A1L2F1P9_9PHAE (Ribosomal protein L4 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1P9_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 7.820e-75
Identity = 128/207 (61.84%), Postives = 155/207 (74.88%), Query Frame = 0
Query:    1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLK 207
            M  EKILTF IK L G+   D  TL+LK K+L+NT+NY+I RAYLTQR NERQG ANTLTR+EVRGGG K W+QKG GRARAGS +SPLWKGGGVSFGPK KLY NKINRKEW+LGLRNLL+AK+ +I ++ N    +YKT +I+K L+ F+I L E TLII+P I ++LL++T NIKT+KL +AN              I KDSLK
Sbjct:    1 MISEKILTFTIKSLKGDT--DKITLSLKVKDLNNTNNYVIQRAYLTQRINERQGTANTLTRAEVRGGGSKTWRQKGMGRARAGSNNSPLWKGGGVSFGPKPKLYLNKINRKEWKLGLRNLLIAKENNITVVENIRITEYKTKNIIKMLEGFSIDLAEDTLIILPMIQKELLQSTNNIKTIKLTLANXXXXXXXXXXXXXLIMKDSLK 205          
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A1I9LVD9_9PHAE (50S ribosomal protein L4, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVD9_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 1.460e-74
Identity = 125/205 (60.98%), Postives = 160/205 (78.05%), Query Frame = 0
Query:    4 EKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIIN-NFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLK 207
            +K+LTFPIK LTGE++ +  TLTLK KE   T NYII+RAY+ QR NERQG  NTLTR+EVRGGGRKPW+QKGTG+AR+GS  SPLWKGGGVSFGPK K Y+NKINRKEWQL +R L++ K+  I +I+ +FSS++ KTN  ++  KV NI   +   II+P I++ L+KATRNIKTV L+ A+ LN+  +L + +LFI+KDSLK
Sbjct:   20 DKVLTFPIKFLTGENNKEIATLTLKVKEGQETDNYIIYRAYVAQRTNERQGTRNTLTRAEVRGGGRKPWRQKGTGKARSGSNRSPLWKGGGVSFGPKPKTYTNKINRKEWQLAIRALILLKEPIITVIDYDFSSLENKTNIFIQLFKVCNIGFSKNITIILPNIEDNLVKATRNIKTVTLMRADTLNLITLLGSDHLFISKDSLK 224          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FAT9_9PHAE4.540e-12892.79Ribosomal protein L4 n=1 Tax=Desmarestia aculeata ... [more]
A0A0R6LUU1_UNDPI2.760e-10676.4450S ribosomal protein L4, chloroplastic n=28 Tax=L... [more]
A0A8F0F722_AKKLU2.260e-10575.00Ribosomal protein L4 n=1 Tax=Akkesiphycus lubricus... [more]
A0A8F0FA21_9PHAE1.850e-10474.04Ribosomal protein L4 n=1 Tax=Chorda asiatica TaxID... [more]
D1GJT1_FUCVE4.140e-9470.0550S ribosomal protein L4, chloroplastic n=3 Tax=Fu... [more]
A0A8F0JXJ6_9PHAE5.230e-9168.60Ribosomal protein L4 n=1 Tax=Protohalopteris sp. T... [more]
A0A141BSP0_9PHAE6.660e-8868.1250S ribosomal protein L4, chloroplastic n=13 Tax=S... [more]
A0A8E6D2Q2_9PHAE8.190e-7862.5050S ribosomal protein L4, chloroplastic n=1 Tax=Is... [more]
A0A1L2F1P9_9PHAE7.820e-7561.84Ribosomal protein L4 n=1 Tax=Coccophora langsdorfi... [more]
A0A1I9LVD9_9PHAE1.460e-7460.9850S ribosomal protein L4, chloroplastic n=1 Tax=Pl... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR01300550S ribosomal protein uL4TIGRFAMTIGR03953TIGR03953coord: 35..207
e-value: 2.8E-55
score: 184.6
IPR01300550S ribosomal protein uL4PANTHERPTHR1074650S RIBOSOMAL PROTEIN L4coord: 10..207
IPR01300550S ribosomal protein uL4HAMAPMF_01328_BRibosomal_L4_Bcoord: 18..208
score: 25.906
IPR002136Ribosomal protein L4/L1ePFAMPF00573Ribosomal_L4coord: 37..207
e-value: 3.2E-50
score: 170.5
IPR023574Ribosomal protein L4 domain superfamilyGENE3D3.40.1370.10coord: 21..208
e-value: 2.3E-58
score: 199.1
IPR023574Ribosomal protein L4 domain superfamilySUPERFAMILY52166Ribosomal protein L4coord: 35..207

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195254contigH-elongata_contig195254:527..1150 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195254.5442.1mRNA_H-elongata_contig195254.5442.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig195254 527..1150 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig195254.5442.1 ID=prot_H-elongata_contig195254.5442.1|Name=mRNA_H-elongata_contig195254.5442.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp
MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFN
ERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPK
SKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKV
FNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLF
ITKDSLKT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013005Ribosomal_uL4/L1e
IPR002136Ribosomal_L4/L1e
IPR023574Ribosomal_L4_dom_sf