prot_H-elongata_contig195080.5436.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig195080.5436.1
Unique Nameprot_H-elongata_contig195080.5436.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length73
Homology
BLAST of mRNA_H-elongata_contig195080.5436.1 vs. uniprot
Match: A0A6H5K446_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K446_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.470e-21
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 0
Query:    5 RAAPSKAVVKYCLWIVQLVFIIIKVDEQIDWNWWVVFLPTWVVLFIHLAGYCIDVSLAMRLSSGTEGKA 73
            R+    AV K C+W++QLVF+IIK+D  +DWNWW+VFLPTW+VLF  L GY +D SLA  LS+G EGKA
Sbjct:  285 RSEARTAVAKDCIWMLQLVFLIIKLDGDVDWNWWLVFLPTWIVLFGQLVGYYVDYSLARNLSAGIEGKA 353          
BLAST of mRNA_H-elongata_contig195080.5436.1 vs. uniprot
Match: D8LBY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY5_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.700e-7
Identity = 24/64 (37.50%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    7 APSKAVVKYCLWIVQLVFIIIKVDEQIDWNWWVVFLPTWVVLFIHLAGYCIDVSLAMRLSSGTE 70
            A  KA+ +  +  +Q++F++ ++D +++WNWWVVF+PTW++    L  +C + +LAM L+ G E
Sbjct:  194 AAIKAMGEAAMLFLQVLFLMWRLDGEVNWNWWVVFVPTWLLHAGQLFTWCTNQALAMSLARGLE 257          
BLAST of mRNA_H-elongata_contig195080.5436.1 vs. uniprot
Match: A0A6H5JKW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW2_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.700e-7
Identity = 25/68 (36.76%), Postives = 44/68 (64.71%), Query Frame = 0
Query:    3 GCRAAPSKAVVKYCLWIVQLVFIIIKVDEQIDWNWWVVFLPTWVVLFIHLAGYCIDVSLAMRLSSGTE 70
            G   A  KA+ +  +  +Q++F++ ++D ++ WNWWVVF+PTW++    L  +C + +LAM L+ G E
Sbjct:  110 GRVVAAIKAMGEAAMLFLQVLFLMWRLDGEVAWNWWVVFVPTWLLHAGQLFTWCTNQALAMSLARGLE 177          
BLAST of mRNA_H-elongata_contig195080.5436.1 vs. uniprot
Match: A0A1I7YS82_9BILA (Uncharacterized protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7YS82_9BILA)

HSP 1 Score: 50.1 bits (118), Expect = 2.440e-5
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 0
Query:   19 IVQLVFIIIKVDEQIDWNWWVVFLPTWVVLFIHLAGYCIDVSLAMRLS 66
            +VQ VF+ +K+D  +DWNW +VF+P W+VL + L      V LA+ LS
Sbjct:   66 VVQFVFLALKLDNVVDWNWAIVFIPAWMVLAVCLIAVVYAVILAILLS 113          
BLAST of mRNA_H-elongata_contig195080.5436.1 vs. uniprot
Match: A0A4U5M6V3_STECR (Uncharacterized protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5M6V3_STECR)

HSP 1 Score: 49.7 bits (117), Expect = 3.570e-5
Identity = 21/48 (43.75%), Postives = 32/48 (66.67%), Query Frame = 0
Query:   19 IVQLVFIIIKVDEQIDWNWWVVFLPTWVVLFIHLAGYCIDVSLAMRLS 66
            ++Q VF+ +K+D  +DWNW +VF+P W+VL + L      V LA+ LS
Sbjct:  161 VIQFVFLALKLDNVVDWNWAIVFIPAWMVLAVCLIAVVYAVILAILLS 208          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195080.5436.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K446_9PHAE2.470e-2160.87J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
D8LBY5_ECTSI1.700e-737.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKW2_9PHAE2.700e-736.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1I7YS82_9BILA2.440e-545.83Uncharacterized protein n=1 Tax=Steinernema glaser... [more]
A0A4U5M6V3_STECR3.570e-543.75Uncharacterized protein n=1 Tax=Steinernema carpoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019396Transmembrane Fragile-X-F-associated proteinPFAMPF10269Tmemb_185Acoord: 19..54
e-value: 1.8E-7
score: 31.1
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 58..73
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..34
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 35..57
NoneNo IPR availableTMHMMTMhelixcoord: 35..57
NoneNo IPR availableTMHMMTMhelixcoord: 12..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195080contigH-elongata_contig195080:286..712 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195080.5436.1mRNA_H-elongata_contig195080.5436.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig195080 286..712 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig195080.5436.1 ID=prot_H-elongata_contig195080.5436.1|Name=mRNA_H-elongata_contig195080.5436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MCGCRAAPSKAVVKYCLWIVQLVFIIIKVDEQIDWNWWVVFLPTWVVLFI
HLAGYCIDVSLAMRLSSGTEGKA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019396TM_Fragile-X-F-assoc