prot_H-elongata_contig194876.5423.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig194876.5423.1
Unique Name	prot_H-elongata_contig194876.5423.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	112

Homology

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BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 4.710e-29
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 0

Query:    4 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 108
            V +  +WHRR+GH+H +SLDILRK  G  + +   +S CDVCAVG ++Q  HPK A++  +RPFQL   D MGPF+P A+GG+ Y+ K  D++ KW  V+L+  K
Sbjct:  263 VKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEK 367

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BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.280e-27
Identity = 50/105 (47.62%), Postives = 69/105 (65.71%), Query Frame = 0

Query:    4 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 108
            V +  +WHRR+GH++++SLDILRK     +     V DC  CA+GK+ Q  HPK A + V RPFQL + D +GPFTP A+GG+KY +K  D+ TKW  + L+  K
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDK 627

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BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.120e-26
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 0

Query:    4 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 108
            V    +WHRR+GH++ +SLD+LR++  + I +   V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674

[Close]

BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.140e-26
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 0

Query:    4 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 108
            V    +WHRR+GH++ +SLD+LR++  + I +   V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 796

[Close]

BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.140e-26
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 0

Query:    4 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 108
            V    +WHRR+GH++ +SLD+LR++  + I +   V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674

[Close]

BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.340e-25
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 0

Query:    4 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKW 99
            V    +WHRR+GH++ +SLD+LR++  + I +   V DC  C +GK+ Q  HPK A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW
Sbjct:   41 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 136

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BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.460e-25
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 0

Query:    4 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKEQA 111
            V +  +WHRR+GH++ +SLD+LRK     + +   V+DC VC +GK+ Q  HPK   + V RPFQ    D +GPFTP A+GG+KY +K  D+ TKW  + L+  K+QA
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLM--KDQA 388

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BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.810e-24
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = 0

Query:    4 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAI---GGYKYVSKITDEYTKWTAVYLLTTK 108
            + +   WHRRLGHL+A+SLDILRK  GT + +   +S C VC + K +Q  HPK +  +++RP QL   D MGP  P A    G + Y  KITD+YTK   VYLL  K
Sbjct:   39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKK 146

[Close]

BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.070e-23
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 0

Query:    4 VANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAI---GGYKYVSKITDEYTKWTAVYLLTTK 108
            + +   WHRRLGHL+A+SL+ILRK  GT + +   +S C VC +GK +Q  HPK +  +++RP QL   D MGP  P A    G + Y  KITD+YTK   VYLL  K
Sbjct:  303 LVSADTWHRRLGHLNARSLEILRKDTGTGVDYRDSLSPCGVCQIGKHKQSPHPKQSTRELSRPGQLVVIDSMGPVNPPAYYKGGSFPYACKITDDYTKMKEVYLLRNK 410

[Close]

BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.910e-23
Identity = 46/103 (44.66%), Postives = 65/103 (63.11%), Query Frame = 0

Query:    3 AVANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKAQQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWTAVYLL 105
            A  N   WHR L HL+ +S+++LRK+    + F   ++ CD+CA+ K++QLAHP+  N +   P QL Y D MG  TP+A GG+ YVSK TD Y+    +YLL
Sbjct:  304 ATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLL 406

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot

BLAST of mRNA_H-elongata_contig194876.5423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K1J1_9PHAE	4.710e-29	48.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBV6_9PHAE	1.280e-27	47.62	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJN3_9PHAE	1.120e-26	45.71	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJH6_9PHAE	1.140e-26	45.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	1.140e-26	45.71	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KNH5_9PHAE	1.340e-25	46.88	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KXM1_9PHAE	2.460e-25	45.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZ34_9PHAE	4.810e-24	47.22	Integrase catalytic domain-containing protein n=2 ...	[more]
A0A6H5KP59_9PHAE	1.070e-23	47.22	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JYD3_9PHAE	1.910e-23	44.66	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 56..112 e-value: 5.0E-8 score: 34.4
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 5..50 e-value: 5.8E-7 score: 29.3
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 6..108
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 6..108
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 62..109

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig194876	contig	H-elongata_contig194876:28..363 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig194876.5423.1	mRNA_H-elongata_contig194876.5423.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig194876 28..363 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig194876.5423.1 ID=prot_H-elongata_contig194876.5423.1|Name=mRNA_H-elongata_contig194876.5423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MNAVANVQVWHRRLGHLHAQSLDILRKRYGTDIIFERGVSDCDVCAVGKA
QQLAHPKTANHKVNRPFQLCYGDFMGPFTPVAIGGYKYVSKITDEYTKWT
AVYLLTTKEQAL

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR025724	GAG-pre-integrase_dom
IPR039537	Retrotran_Ty1/copia-like
IPR012337	RNaseH-like_sf