prot_H-elongata_contig19475.5417.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19475.5417.1
Unique Nameprot_H-elongata_contig19475.5417.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length206
Homology
BLAST of mRNA_H-elongata_contig19475.5417.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 3.990e-86
Identity = 128/204 (62.75%), Postives = 159/204 (77.94%), Query Frame = 0
Query:    1 MTDMGDVSHILGMEVKHKYEKGTLAIIQKAYVDSILERFGMHDFNATHTPRYGPELSVEQPGSKLLNPAAMELYQSITDSLLYLPQCTRYNMCYTVNQLTRACSKLAEIHMAAAKHALRYLQRTPDLSIVLKRGQFRMVSYTDASFGANPDNRKSTTGYIFFLGGGLISFGSKTQSLTAQSTVEGELQALSYETREAVYLSNFL 204
            MTDMG+V  ++G+EV+  YE GTLAI Q  Y   IL+R+GM   N   TP YG ELS EQP  +LL P   + +Q+IT SLLYL QCTRY++ Y V+QLTRAC+  A++HMAAAKH LRYL+ TPDL IV K+GQFR+  +TD+SFGANPDN +STTGY+FFLGGGLIS+G+K Q+L AQ+TVE ELQALS+  REAVY+SNF+
Sbjct:    6 MTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFM 209          
BLAST of mRNA_H-elongata_contig19475.5417.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 1.110e-82
Identity = 124/204 (60.78%), Postives = 160/204 (78.43%), Query Frame = 0
Query:    1 MTDMGDVSHILGMEVKHKYEKGTLAIIQKAYVDSILERFGMHDFNATHTPRYGPELSVEQPGSKLLNPAAMELYQSITDSLLYLPQCTRYNMCYTVNQLTRACSKLAEIHMAAAKHALRYLQRTPDLSIVLKRGQFRMVSYTDASFGANPDNRKSTTGYIFFLGGGLISFGSKTQSLTAQSTVEGELQALSYETREAVYLSNFL 204
            MTDMG+V  ILG+ V+  YE+GTLAI Q+ YV+++LERFGM + N   TP YG E+S  QP  ++L P   + YQS+T S+LYL QCTR+++ Y   QL++ACS  A+++M AAKH LRYL+  P L IV KRGQFR+ ++TD+SFGANPDN +STTGY+FFL GGLIS+G+KTQ+LTAQSTVE E+QALSY  REAVY+SNF+
Sbjct:   83 MTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFM 286          
BLAST of mRNA_H-elongata_contig19475.5417.1 vs. uniprot
Match: A0A6H5JPQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ2_9PHAE)

HSP 1 Score: 253 bits (647), Expect = 1.320e-82
Identity = 120/204 (58.82%), Postives = 160/204 (78.43%), Query Frame = 0
Query:    1 MTDMGDVSHILGMEVKHKYEKGTLAIIQKAYVDSILERFGMHDFNATHTPRYGPELSVEQPGSKLLNPAAMELYQSITDSLLYLPQCTRYNMCYTVNQLTRACSKLAEIHMAAAKHALRYLQRTPDLSIVLKRGQFRMVSYTDASFGANPDNRKSTTGYIFFLGGGLISFGSKTQSLTAQSTVEGELQALSYETREAVYLSNFL 204
            MTD+G+V  ILG++V+  Y++GTL I Q+ YV+++LERFGM + N   TP YG E+S  QP  ++L P   ++YQS+T S+LYL QCTR+++ Y   QL++ACS  A+++M AAKH LRYL+  P L IV KRGQFR+ ++TD+SFGANPDN +STTGY+FFL  GLIS+G+KTQ+LTAQSTVE E+QALSY  REAVY+SNF+
Sbjct:    1 MTDIGEVKRILGIDVQRDYKQGTLVISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLARGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFM 204          
BLAST of mRNA_H-elongata_contig19475.5417.1 vs. uniprot
Match: A0A6H5JW03_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW03_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 2.340e-80
Identity = 123/204 (60.29%), Postives = 154/204 (75.49%), Query Frame = 0
Query:    1 MTDMGDVSHILGMEVKHKYEKGTLAIIQKAYVDSILERFGMHDFNATHTPRYGPELSVEQPGSKLLNPAAMELYQSITDSLLYLPQCTRYNMCYTVNQLTRACSKLAEIHMAAAKHALRYLQRTPDLSIVLKRGQFRMVSYTDASFGANPDNRKSTTGYIFFLGGGLISFGSKTQSLTAQSTVEGELQALSYETREAVYLSNFL 204
            MTDMG+V  ++G+ V+  YE GTLAI Q  Y   I +R+GM   N   TP YG ELS EQP  +LL P   + +Q+IT SLLYL QCTRY+  Y V+QL RAC+  A++HMAAAKH LRYL+ TPDL IV K+GQFR+  +TD+SFGANPDN +S TGY+FFLGGGLIS+G+K Q+L AQ+T+E ELQALS+  REAVY+SNF+
Sbjct:  132 MTDMGEVKRVIGIAVQRDYELGTLAISQGPYARDIQQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDPSYAVHQLKRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSITGYLFFLGGGLISYGAKAQTLAAQNTLEAELQALSFSAREAVYISNFM 335          
BLAST of mRNA_H-elongata_contig19475.5417.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 2.460e-80
Identity = 127/204 (62.25%), Postives = 159/204 (77.94%), Query Frame = 0
Query:    1 MTDMGDVSHILGMEVKHKYEKGTLAIIQKAYVDSILERFGMHDFNATHTPRYGPELSVEQPGSKLLNPAAMELYQSITDSLLYLPQCTRYNMCYTVNQLTRACSKLAEIHMAAAKHALRYLQRTPDLSIVLKRGQFRMVSYTDASFGANPDNRKSTTGYIFFLGGGLISFGSKTQSLTAQSTVEGELQALSYETREAVYLSNFL 204
            MTDMG+V  ++G+EV+  YE GTLAI Q  Y   IL+R+GM   N   TP YG ELS EQP  +LL P   + +Q+IT SLLYL QCTRY++ Y V+QLTRAC+  A++HMAAAKH LRYL+ TPDL IV K+G+FR+  +TD+SFGANPDN +STTGY+FFLGGGLIS+G+K Q+L AQ+TVE ELQALS+  REAVY+SNF+
Sbjct:  443 MTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFM 646          
BLAST of mRNA_H-elongata_contig19475.5417.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 7.040e-80
Identity = 124/221 (56.11%), Postives = 162/221 (73.30%), Query Frame = 0
Query:    1 MTDMGDVSHILGMEVKHKYEKGTLAIIQKAYVDSILERFGMHDFNATHTPRYGPELSVEQPGSKLLNPAAMELYQSITDSLLYLPQCTRYNMCYTVNQLTRACSKLAEIHMAAAKHALRYLQRTPD-----------------LSIVLKRGQFRMVSYTDASFGANPDNRKSTTGYIFFLGGGLISFGSKTQSLTAQSTVEGELQALSYETREAVYLSNFL 204
            MTDMG+V  ILG++V+  YE+GTLAI Q+ YV+++LERFGM + N   TP YG E+S  QP  ++L P   ++YQS+T S+LYL QCTR+++ Y   QL++ACS  A+++M AAKH LRYL+  P                  L IV KRGQFR+ ++TD+SFGANPDN +STTGY+FFL GGLIS+G+KTQ+LTAQSTVE E+QALSY  REAVY+SNF+
Sbjct:   25 MTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVXXXXXXXXXXXXXXXSVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFM 245          
BLAST of mRNA_H-elongata_contig19475.5417.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 2.750e-79
Identity = 123/204 (60.29%), Postives = 161/204 (78.92%), Query Frame = 0
Query:    1 MTDMGDVSHILGMEVKHKYEKGTLAIIQKAYVDSILERFGMHDFNATHTPRYGPELSVEQPGSKLLNPAAMELYQSITDSLLYLPQCTRYNMCYTVNQLTRACSKLAEIHMAAAKHALRYLQRTPDLSIVLKRGQFRMVSYTDASFGANPDNRKSTTGYIFFLGGGLISFGSKTQSLTAQSTVEGELQALSYETREAVYLSNFL 204
            MTDMG+V  ILG++V+  YE+GTLAI Q+ YV+++LERFGM + N   TP YG E+S  QP  ++L P   ++YQS+  S+LYL QCTR+++ Y   QL++ACS  A+++M AAKH LRYL+  P L IV KRGQFR+ ++TD+SFGANPDN +STTGY+FFL GGLIS+G+KTQ+LTAQSTVE E+QALSY  REAVY+SNF+
Sbjct:  410 MTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFM 613          
BLAST of mRNA_H-elongata_contig19475.5417.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 2.880e-79
Identity = 122/204 (59.80%), Postives = 160/204 (78.43%), Query Frame = 0
Query:    1 MTDMGDVSHILGMEVKHKYEKGTLAIIQKAYVDSILERFGMHDFNATHTPRYGPELSVEQPGSKLLNPAAMELYQSITDSLLYLPQCTRYNMCYTVNQLTRACSKLAEIHMAAAKHALRYLQRTPDLSIVLKRGQFRMVSYTDASFGANPDNRKSTTGYIFFLGGGLISFGSKTQSLTAQSTVEGELQALSYETREAVYLSNFL 204
            MTDMG+V  ILG++V+  YE+GTLAI Q+ YV++ LERFGM + N   T  YG E+S  QP  ++L P   ++YQS+T S+LYL QCT++++ Y   QL++ACS  A+++M AAKH LRYL+  P L IV KRGQFR+ ++TD+SFGANPDN +STTGY+FFL GGLIS+G+KTQ+LTAQSTVE E+QALSY  REAVY+SNF+
Sbjct:  202 MTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFM 405          
BLAST of mRNA_H-elongata_contig19475.5417.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 3.100e-79
Identity = 120/198 (60.61%), Postives = 155/198 (78.28%), Query Frame = 0
Query:    1 MTDMGDVSHILGMEVKHKYEKGTLAIIQKAYVDSILERFGMHDFNATHTPRYGPELSVEQPGSKLLNPAAMELYQSITDSLLYLPQCTRYNMCYTVNQLTRACSKLAEIHMAAAKHALRYLQRTPDLSIVLKRGQFRMVSYTDASFGANPDNRKSTTGYIFFLGGGLISFGSKTQSLTAQSTVEGELQALSYETREAV 198
            MTDMG+V  ILG++V+  YE+GTLAI Q+ YV+++LERFGM + N   TP YG E+S  QP  ++L P   + YQS+T S+LYL QCTR+++ Y   QL++ACS  A+++M AAKH LRYL+  P L IV KRGQFR+ ++TD+SFGANPDN +STTGY+FFL GGLIS+G+KTQ+LTAQSTVE E+QALSY  REAV
Sbjct:   83 MTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVETEIQALSYLAREAV 280          
BLAST of mRNA_H-elongata_contig19475.5417.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 7.570e-79
Identity = 124/204 (60.78%), Postives = 162/204 (79.41%), Query Frame = 0
Query:    1 MTDMGDVSHILGMEVKHKYEKGTLAIIQKAYVDSILERFGMHDFNATHTPRYGPELSVEQPGSKLLNPAAMELYQSITDSLLYLPQCTRYNMCYTVNQLTRACSKLAEIHMAAAKHALRYLQRTPDLSIVLKRGQFRMVSYTDASFGANPDNRKSTTGYIFFLGGGLISFGSKTQSLTAQSTVEGELQALSYETREAVYLSNFL 204
            MTDMG+V  ILG++V+  YE+GTLAI Q+ YV+++LERFGM + N   TP YG E+S  QP  ++L P   ++YQS+T S+LYL QCTR+++ Y   QL++ACS  A+++M AAKH LRYL+  P L IV KRGQFR+ ++TD+SFGANPDN +STTGY+FFL GGLIS+G+KTQ+LTAQSTVE E+QALSY  REAVY+SNF+
Sbjct:  566 MTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFM 769          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19475.5417.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC04_9PHAE3.990e-8662.75Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUJ3_9PHAE1.110e-8260.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JPQ2_9PHAE1.320e-8258.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW03_9PHAE2.340e-8060.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE2.460e-8062.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S5_9PHAE7.040e-8056.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE2.750e-7960.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE2.880e-7959.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAK0_9PHAE3.100e-7960.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE7.570e-7960.78Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 67..203
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 67..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19475contigH-elongata_contig19475:792..1409 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19475.5417.1mRNA_H-elongata_contig19475.5417.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19475 2..5817 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19475.5417.1 ID=prot_H-elongata_contig19475.5417.1|Name=mRNA_H-elongata_contig19475.5417.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MTDMGDVSHILGMEVKHKYEKGTLAIIQKAYVDSILERFGMHDFNATHTP
RYGPELSVEQPGSKLLNPAAMELYQSITDSLLYLPQCTRYNMCYTVNQLT
RACSKLAEIHMAAAKHALRYLQRTPDLSIVLKRGQFRMVSYTDASFGANP
DNRKSTTGYIFFLGGGLISFGSKTQSLTAQSTVEGELQALSYETREAVYL
SNFLI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like