prot_H-elongata_contig19440.5400.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19440.5400.1
Unique Nameprot_H-elongata_contig19440.5400.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length178
Homology
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: D8LD88_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD88_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 1.360e-62
Identity = 122/197 (61.93%), Postives = 135/197 (68.53%), Query Frame = 0
Query:    1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRDPAVA-------ESPRGVGRDGSI------------GGDGDACGDRENAGGSRGGVDGGDTVDVVVTSERSWEEGDDVDGSGDDERQARELDWRSDPAHLRAERDVFWLMMALTSRLGGVGSGLGMRELWLPGVPQLKV 178
            RDVGRTFP Q LF+S+NGPGQN+LANVLKA LKTNPDVGYCQGMNFVAGSLLLAC+TRDPAV        +  R V  D S             GGDGD       A           ++ +  TS  +WEE DD DGSG+DE Q    +WRS PAHLRAE+DVFWLM+ALTSRL GVGSGLGMRELWLPGVPQLKV
Sbjct:  202 RDVGRTFPRQDLFKSRNGPGQNLLANVLKACLKTNPDVGYCQGMNFVAGSLLLACATRDPAVGAPCYPNCDRRRSVRGDSSXXXXXXXXXXXXDGGDGDVSPFVATA----------TSMALSPTSASAWEEWDDFDGSGEDESQP---EWRSGPAHLRAEKDVFWLMLALTSRLSGVGSGLGMRELWLPGVPQLKV 385          
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A6H5KV33_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV33_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.570e-31
Identity = 79/145 (54.48%), Postives = 89/145 (61.38%), Query Frame = 0
Query:    1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRDPAVA----------ESPRGVGR-------DGSIGGDGDACGDRENAGGSRGGVDGGDTVDVVVTSERSWEEGDDVDGSGDDERQAR 128
            RDVGRTFP Q LF+S+NGPGQN+LANVLKA LKTNPDVGYCQGMNFVAGSLLLAC+TRDPAV            S RG          D  +GGDGD       A           +  +  TS  +WEE DD DGSG+D+ Q R
Sbjct:  203 RDVGRTFPRQDLFKSRNGPGQNLLANVLKACLKTNPDVGYCQGMNFVAGSLLLACATRDPAVGAPCYPNCDRRRSVRGDSSSSVVDDDDAGVGGDGDVSPFVATAA----------STALSPTSASAWEEWDDFDGSGEDDSQVR 337          
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A835YVP9_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 6.520e-22
Identity = 74/210 (35.24%), Postives = 99/210 (47.14%), Query Frame = 0
Query:    1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRDPAVAESPRGVGRDGSIGGDGDACGDRENAGGSRGGVDGGDTVDVVVTSERSWEEGDDV--------------------DGSGDDERQARELDWRSDPAHLRAERDVFWLMMALTSRLGGVGSGLG------------MRELWLPGVPQLKV 178
            RDV RTFP    FR ++GPG+NML+NVL+A    +PDVGYCQGMNFVAG+LLLA  +  P +   P             DA  D  +        DG  +   V  +   + +  D                     + S D     R +DW  D  HLR E+DVFW+M AL ++ G  G+               + ELWLPGVP++K+
Sbjct:  118 RDVCRTFPGLAFFRRRDGPGENMLSNVLRACAIAHPDVGYCQGMNFVAGALLLAHLSSHPDMTPHPED-----------DAAHDAHS--------DGSQSSQEVKHAHEVFCDAKDAPLYXXXXXXXXXXXXXXXXXNTSRDASPDPRTIDWWPDREHLRMEQDVFWMMAALLTK-GRAGAEAHDELCLKARERHEVEELWLPGVPEMKL 307          
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A7S3UWK3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWK3_HETAK)

HSP 1 Score: 74.3 bits (181), Expect = 8.190e-13
Identity = 40/67 (59.70%), Postives = 44/67 (65.67%), Query Frame = 0
Query:    1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRDPAVAESPR 67
            RD+GRT+P   LFR   G GQ MLANVL A L  + DVGYCQGMNFVAG+LLLA      A   S R
Sbjct:   34 RDLGRTYPAHPLFRDPCGAGQQMLANVLNACLHYHRDVGYCQGMNFVAGALLLAHLEGTAAAGRSRR 100          
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A0S4TE76_CRYHO (Rab-GAP TBC domain-containing protein n=4 Tax=Cryptosporidium TaxID=5806 RepID=A0A0S4TE76_CRYHO)

HSP 1 Score: 73.2 bits (178), Expect = 4.820e-12
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 0
Query:    1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRD 59
            RD+ RTFP   LFR KN  GQN L +VL+A+   NPDVGYCQGM F+ G LL+  S  D
Sbjct:  159 RDISRTFPRHSLFRDKNNHGQNSLFSVLRAYSLYNPDVGYCQGMGFIVGVLLMYMSEED 217          
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: G4XH92_BISBE (Pollux (Fragment) n=1 Tax=Biston betularia TaxID=82595 RepID=G4XH92_BISBE)

HSP 1 Score: 68.2 bits (165), Expect = 1.240e-11
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    2 DVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLL 53
            D+GRTFP    F S  GPGQ  L N+LKA+   +PDVGYCQG++FVAG LLL
Sbjct:   54 DLGRTFPKHSYFASALGPGQLALYNILKAYSLVDPDVGYCQGLSFVAGVLLL 105          
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A1J4MGN7_9CRYT (TBC domain-containing protein n=1 Tax=Cryptosporidium ubiquitum TaxID=857276 RepID=A0A1J4MGN7_9CRYT)

HSP 1 Score: 71.2 bits (173), Expect = 2.340e-11
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0
Query:    1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRD 59
            RD+ RTFP   LFR +N  GQN L +VL+A+   NPDVGYCQGM F+ G LL+  S  D
Sbjct:  161 RDISRTFPRHCLFRDRNNHGQNSLFSVLRAYSLYNPDVGYCQGMGFIVGVLLMYMSEED 219          
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A453H3T5_AEGTS (Rab-GAP TBC domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453H3T5_AEGTS)

HSP 1 Score: 66.2 bits (160), Expect = 6.770e-11
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0
Query:    1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRD 59
            RD+ RTFP+   F+ ++GPGQ  L NVLKA+   + DVGY QGM F+AG LLL  S  D
Sbjct:   17 RDISRTFPSHIFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAGLLLLYMSEED 75          
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A2K1X6B1_POPTR (Rab-GAP TBC domain-containing protein (Fragment) n=1 Tax=Populus trichocarpa TaxID=3694 RepID=A0A2K1X6B1_POPTR)

HSP 1 Score: 65.5 bits (158), Expect = 7.610e-11
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0
Query:    1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACSTRD 59
            RD+ RTFP+   F+ ++GPGQ  L NVLKA+   + DVGY QGM F+AG LLL  S  D
Sbjct:   30 RDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEED 88          
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Match: A0A1R2BHZ2_9CILI (Rab-GAP TBC domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BHZ2_9CILI)

HSP 1 Score: 67.8 bits (164), Expect = 1.010e-10
Identity = 29/56 (51.79%), Postives = 42/56 (75.00%), Query Frame = 0
Query:    1 RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGSLLLACS 56
            +D+GRTFP++ LF+S  G GQ  + N+LKA+   + D+GYCQGMNF+ G+LL+  S
Sbjct:    4 KDIGRTFPHESLFKSFCGFGQTCMFNILKAYASYDSDIGYCQGMNFIVGTLLMHLS 59          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19440.5400.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD88_ECTSI1.360e-6261.93Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KV33_9PHAE1.570e-3154.48Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A835YVP9_9STRA6.520e-2235.24Rab-GAP TBC domain-containing protein n=1 Tax=Trib... [more]
A0A7S3UWK3_HETAK8.190e-1359.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0S4TE76_CRYHO4.820e-1257.63Rab-GAP TBC domain-containing protein n=4 Tax=Cryp... [more]
G4XH92_BISBE1.240e-1161.54Pollux (Fragment) n=1 Tax=Biston betularia TaxID=8... [more]
A0A1J4MGN7_9CRYT2.340e-1155.93TBC domain-containing protein n=1 Tax=Cryptosporid... [more]
A0A453H3T5_AEGTS6.770e-1154.24Rab-GAP TBC domain-containing protein n=1 Tax=Aegi... [more]
A0A2K1X6B1_POPTR7.610e-1154.24Rab-GAP TBC domain-containing protein (Fragment) n... [more]
A0A1R2BHZ2_9CILI1.010e-1051.79Rab-GAP TBC domain-containing protein n=1 Tax=Sten... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.8.270coord: 1..63
e-value: 2.3E-20
score: 74.4
NoneNo IPR availablePANTHERPTHR22957:SF444coord: 1..48
NoneNo IPR availablePANTHERPTHR22957TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINcoord: 1..48
IPR000195Rab-GTPase-TBC domainPFAMPF00566RabGAP-TBCcoord: 1..56
e-value: 1.5E-17
score: 64.0
IPR000195Rab-GTPase-TBC domainPROSITEPS50086TBC_RABGAPcoord: 1..178
score: 11.235
IPR035969Rab-GTPase-TBC domain superfamilySUPERFAMILY47923Ypt/Rab-GAP domain of gyp1pcoord: 1..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19440contigH-elongata_contig19440:4012..6447 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19440.5400.1mRNA_H-elongata_contig19440.5400.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19440 4012..6447 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19440.5400.1 ID=prot_H-elongata_contig19440.5400.1|Name=mRNA_H-elongata_contig19440.5400.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp
RDVGRTFPNQRLFRSKNGPGQNMLANVLKAFLKTNPDVGYCQGMNFVAGS
LLLACSTRDPAVAESPRGVGRDGSIGGDGDACGDRENAGGSRGGVDGGDT
VDVVVTSERSWEEGDDVDGSGDDERQARELDWRSDPAHLRAERDVFWLMM
ALTSRLGGVGSGLGMRELWLPGVPQLKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
IPR035969Rab-GTPase_TBC_sf