prot_H-elongata_contig19334.5362.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19334.5362.1
Unique Nameprot_H-elongata_contig19334.5362.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length251
Homology
BLAST of mRNA_H-elongata_contig19334.5362.1 vs. uniprot
Match: D8LBD7_ECTSI (GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD7_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 3.560e-62
Identity = 106/171 (61.99%), Postives = 123/171 (71.93%), Query Frame = 0
Query:    1 MGRGS-SQKAKNGEVDDLLNSEAFLRKKVQMLEXXXXXXXXXXXXXXXXEQKAWGEWGPQIERLEKEFDLLKSRGGEARTKAFDKGKADAINQILVVADNLERASGVIKAETDGERAVVAHYNEAYTKMLGCLEDLGLKEVETIGAQFDYNIHNAIMHEGTNEFEEDTVCK 170
             GRG  S+ AK  EVDDLLNS+AFL KKV+ML+                  + W EWGPQ++RLEKEF  LK RGGEART+A++KGKA+AIN IL VADN ERA+G I AETDGERAVVA+Y + Y  M+ CLE L L EV+TIGA FDYNIHNAIM E T+EF ED VCK
Sbjct:   87 FGRGPFSRAAKKDEVDDLLNSDAFLNKKVEMLQKQINATQADIVTAQAQADEQWAEWGPQVQRLEKEFSALKGRGGEARTQAYNKGKAEAINNILGVADNFERAAGAISAETDGERAVVAYYKDTYDNMMKCLEGLDLVEVDTIGAPFDYNIHNAIMRENTDEFPEDVVCK 257          
BLAST of mRNA_H-elongata_contig19334.5362.1 vs. uniprot
Match: A0A835ZCF7_9STRA (GrpE protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCF7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.560e-35
Identity = 75/163 (46.01%), Postives = 96/163 (58.90%), Query Frame = 0
Query:   13 EVDDLLNSEAFLRKKVQMLEXXXXXXXXXXXXXXXXEQKAWGEWGPQIERLEKEFDLLKSRGGEARTKAFDKGKADAINQILVVADNLERASGVIKAETDGERAVVAHYNEAYTKMLGCLEDLGLKEVETIGAQFDYNIHNAIMHEGTNEFEEDTVCKNQRFT 175
            +VDDLL S AFL KKV++L+                  K W EWGPQI+RLE EF  LK R      +A ++ K  A+  IL V DN ERAS  IKA+TDGE+AVVA+Y   Y  M    ++LG++ V T+G  FDYN+H A+M + + E EED V   Q FT
Sbjct:   62 DVDDLLESPAFLTKKVEVLKKQLAKTEEEIAAANAEADKEWEEWGPQIQRLETEFTFLKQRMLNDTMEAGNEAKVKALKAILTVNDNFERASQAIKAQTDGEKAVVAYYKGVYNAMHTVFKELGMEPVPTVGHPFDYNLHEAVMRQPSAEHEEDLVS--QEFT 222          
BLAST of mRNA_H-elongata_contig19334.5362.1 vs. uniprot
Match: H6WB81_VAULI (GrpE protein homolog n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB81_VAULI)

HSP 1 Score: 118 bits (296), Expect = 8.160e-29
Identity = 62/155 (40.00%), Postives = 86/155 (55.48%), Query Frame = 0
Query:   15 DDLLNSEAFLRKKVQMLEXXXXXXXXXXXXXXXXEQKAWGEWGPQIERLEKEFDLLKSRGGEARTKAFDKGKADAINQILVVADNLERASGVIKAETDGERAVVAHYNEAYTKMLGCLEDLGLKEVETIGAQFDYNIHNAIMHEGTNEFEEDTVC 169
            DDLL +  FL KK+++L                   K W EWGPQIERLE+EF+ +++R      +A    K   + +IL V+DN  RAS  I   T+GE AVV +Y   Y +M      LG+K + T+G  FDYN+H A+M + + EF+ED VC
Sbjct:   68 DDLLQTPQFLTKKIEVLNKQIAKKEEEISAANLEADKEWEEWGPQIERLEREFENVRARMLNDTMEASTSAKVKVLKEILAVSDNFMRASQAISPSTEGEIAVVDYYKSIYEEMQAVFVALGMKPIATVGEPFDYNLHEAVMRQSS-EFDEDIVC 221          
BLAST of mRNA_H-elongata_contig19334.5362.1 vs. uniprot
Match: A0A448ZSA7_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSA7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 8.770e-29
Identity = 60/156 (38.46%), Postives = 93/156 (59.62%), Query Frame = 0
Query:   14 VDDLLNSEAFLRKKVQMLEXXXXXXXXXXXXXXXXEQKAWGEWGPQIERLEKEFDLLKSRGGEARTKAFDKGKADAINQILVVADNLERASGVIKAETDGERAVVAHYNEAYTKMLGCLEDLGLKEVETIGAQFDYNIHNAIMHEGTNEFEEDTVC 169
             DD+L+S AFL++KV++LE                ++ A  EWGPQ+E LE+E+  ++ R  E   +     K   +  IL + DN +RASGVI AET+ ++A+ A Y +AY  +L   +++G+ EVET+G +FDY +H A+M    +E+EE  VC
Sbjct:   70 ADDILSSPAFLKRKVEVLESDIAKTEEDLVAATERKEIAKEEWGPQLEALEREYTNIQQRMTEQNQEGDSDAKVRVVKGILDLLDNFDRASGVIVAETEADQAIEAAYKQAYQDILDKFKEMGVTEVETVGTEFDYELHQAVMQMPGSEYEEGFVC 225          
BLAST of mRNA_H-elongata_contig19334.5362.1 vs. uniprot
Match: A0A7S4AM71_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AM71_9STRA)

HSP 1 Score: 116 bits (290), Expect = 6.700e-28
Identity = 62/165 (37.58%), Postives = 95/165 (57.58%), Query Frame = 0
Query:    6 SQKAKNGEVDDLLNSEAFLRKKVQMLEXXXXXXXXXXXXXXXXEQKAWGEWGPQIERLEKEFDLLKSRGGEARTKAFDKGKADAINQILVVADNLERASGVIKAETDGERAVVAHYNEAYTKMLGCLEDLGLKEVETIGAQFDYNIHNAIMHEGTNEFEEDTVCK 170
            S +A   +V+D+L+S AFL++K+++LE                ++ A  EWGPQIE L++E+  ++ R  E         K   +  IL + DN +RASGVI AET+ E+ + A Y +AY  +L    ++G+ EVET+G +FDY +H A+M     E+EE  VCK
Sbjct:   62 SAEAPAADVNDILSSPAFLKRKLEVLESDIATTEEELVAATERKEIAKEEWGPQIEALQREYTNIQQRMTEQNQVGDSDAKVRVVKGILDLLDNFDRASGVIVAETEVEQTIEAGYKQAYQDILDQFAEMGVTEVETLGTEFDYELHQAVMQMPGTEYEEGVVCK 226          
BLAST of mRNA_H-elongata_contig19334.5362.1 vs. uniprot
Match: A0A7S0UHW3_9STRA (GrpE protein homolog n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UHW3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.060e-27
Identity = 58/159 (36.48%), Postives = 93/159 (58.49%), Query Frame = 0
Query:   11 NGEVDDLLNSEAFLRKKVQMLEXXXXXXXXXXXXXXXXEQKAWGEWGPQIERLEKEFDLLKSRGGEARTKAFDKGKADAINQILVVADNLERASGVIKAETDGERAVVAHYNEAYTKMLGCLEDLGLKEVETIGAQFDYNIHNAIMHEGTNEFEEDTVC 169
            + + +D+LNS AFL++K+++LE                ++ A  EWGPQ+E L++E+  ++ R  E   +     K   +  +L + DN +RASGVI AETD E+ + A Y +AY  +L   + +G+ EVET+G++FDY +H A+M     E+EE  VC
Sbjct:  103 SADSNDILNSPAFLKRKLEVLESDIATADEDLAAATERKEVAKEEWGPQLEALQREYQNIQQRMTEQNQEGDSDAKVRVVKGVLDLLDNFDRASGVIVAETDEEKQIEAEYKQAYQDILDQFKKMGVMEVETVGSEFDYELHQAVMQMPGTEYEEGYVC 261          
BLAST of mRNA_H-elongata_contig19334.5362.1 vs. uniprot
Match: A0A7S2V1T8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1T8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.100e-26
Identity = 53/156 (33.97%), Postives = 87/156 (55.77%), Query Frame = 0
Query:   14 VDDLLNSEAFLRKKVQMLEXXXXXXXXXXXXXXXXEQKAWGEWGPQIERLEKEFDLLKSRGGEARTKAFDKGKADAINQILVVADNLERASGVIKAETDGERAVVAHYNEAYTKMLGCLEDLGLKEVETIGAQFDYNIHNAIMHEGTNEFEEDTVC 169
            VDDLLN+ AFL+KK++ L                   K W EWGPQI R ++E+  L++R   A  +A    K   + ++L   DN +RA    K +++ E+A +  Y + +  +      LG+KE+ T+G  FD+N+H+A+M + ++E+ EDT+C
Sbjct:  118 VDDLLNTPAFLQKKIEALNKSMVKVQEQIDEADAEAAKEWEEWGPQISRAKREYQALRARMVNATMEASTTAKVKCLKEVLQAYDNFQRAQAAFKPQSEDEQAALDQYTKMFDDLNEVFTKLGMKEIPTVGEPFDFNLHSAVMQQPSDEYPEDTIC 273          
BLAST of mRNA_H-elongata_contig19334.5362.1 vs. uniprot
Match: A0A7S3L4W1_9STRA (GrpE protein homolog n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4W1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.050e-25
Identity = 55/165 (33.33%), Postives = 91/165 (55.15%), Query Frame = 0
Query:    4 GSSQKAKNGEVDDLLNSEAFLRKKVQMLEXXXXXXXXXXXXXXXXEQKAWGEWGPQIERLEKEFDLLKSRGGEARTKAFDKGKADAINQILVVADNLERASGVIKAETDGERAVVAHYNEAYTKMLGCLEDLGLKEVETIGAQFDYNIHNAIMHEGTNEFEEDTV 168
            G + ++ N    D+LNS AFL++K+ +L+                  +   EW  Q++ L+KE+  +++R G+ + K           + L V DN +RA GVI AETD ++ +   Y   Y ++L  L DLG++EV+T+G +FDY IH A+M + ++E+EE  V
Sbjct:   54 GETPQSNNDSSTDILNSPAFLKRKIDVLKSDIAKAEEGIAAAKQRLDEGKAEWEGQLDELQKEYQNIQARLGDQQKKGGSMAIVQVAREALKVLDNFDRAFGVITAETDSQKKIEEEYRTTYNEILTILADLGVEEVQTVGTEFDYEIHQAVMQKPSDEYEEGIV 218          
BLAST of mRNA_H-elongata_contig19334.5362.1 vs. uniprot
Match: A0A7R9WM61_9STRA (GrpE protein homolog n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WM61_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.120e-23
Identity = 60/154 (38.96%), Postives = 94/154 (61.04%), Query Frame = 0
Query:   16 DLLNSEAFLRKKVQMLEXXXXXXXXXXXXXXXXEQKAWGEWGPQIERLEKEFDLLKSRGGEARTKAFDKGKADAINQILVVADNLERASGVIKAETDGERAVVAHYNEAYTKMLGCLEDLGLKEVETIGAQFDYNIHNAIMHEGTNEFEEDTVC 169
            D+LNS AFL++K+++LE       XXXXXXXXX      EW  Q+++LE E+  +K R      +      ++  + IL + DN ER  G++  ETD E+A+   Y + ++ +L  LE LG+K+VET+G +FDY +H A+M   + E+EE+ +C
Sbjct:   70 DILNSPAFLQRKLEVLETDIKKADXXXXXXXXXXSAGKEEWQDQLDKLEVEYKTIKDRMSAQTDQNDVVATSEVASAILELVDNFERGFGIVIPETDEEKAIDEEYRKVHSDILATLEKLGVKQVETVGKEFDYEVHQAVMQRASEEYEENIIC 223          
BLAST of mRNA_H-elongata_contig19334.5362.1 vs. uniprot
Match: A0A7S2MQC1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MQC1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.450e-23
Identity = 52/157 (33.12%), Postives = 84/157 (53.50%), Query Frame = 0
Query:   13 EVDDLLNSEAFLRKKVQMLEXXXXXXXXXXXXXXXXEQKAWGEWGPQIERLEKEFDLLKSRGGEARTKAFDKGKADAINQILVVADNLERASGVIKAETDGERAVVAHYNEAYTKMLGCLEDLGLKEVETIGAQFDYNIHNAIMHEGTNEFEEDTVC 169
            E  D+LNS AFL++KV +L+                 +    EWG +++ L+KE+  ++ R  +   +       + + ++L V DN +RA G I  ETD E+ +   Y + Y  +L   E+LG+K VET+G +FDY +H A+M    +E+EE  VC
Sbjct:  111 EATDILNSPAFLKRKVDVLQSDIAAVEGEIDESMKLLEAGKAEWGQKLDDLQKEYQNIQDRMNKQTKEGGGTATVEVVRKMLEVLDNYDRAFGAITPETDEEKEIEQTYKDTYDLILKTFEELGVKAVETLGTEFDYEVHQAVMQRPCDEYEEGIVC 267          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19334.5362.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBD7_ECTSI3.560e-6261.99GrpE protein homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835ZCF7_9STRA4.560e-3546.01GrpE protein homolog n=1 Tax=Tribonema minus TaxID... [more]
H6WB81_VAULI8.160e-2940.00GrpE protein homolog n=1 Tax=Vaucheria litorea Tax... [more]
A0A448ZSA7_9STRA8.770e-2938.46GrpE protein homolog n=1 Tax=Pseudo-nitzschia mult... [more]
A0A7S4AM71_9STRA6.700e-2837.58GrpE protein homolog n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S0UHW3_9STRA1.060e-2736.48GrpE protein homolog n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S2V1T8_9STRA1.100e-2633.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3L4W1_9STRA5.050e-2533.33GrpE protein homolog n=1 Tax=Amphora coffeiformis ... [more]
A0A7R9WM61_9STRA3.120e-2338.96GrpE protein homolog n=1 Tax=Craspedostauros austr... [more]
A0A7S2MQC1_9STRA5.450e-2333.12Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 14..48
NoneNo IPR availablePANTHERPTHR21237:SF27GRPE PROTEIN HOMOLOGcoord: 59..171
IPR000740GrpE nucleotide exchange factorPFAMPF01025GrpEcoord: 25..170
e-value: 8.8E-21
score: 74.3
IPR000740GrpE nucleotide exchange factorPANTHERPTHR21237GRPE PROTEINcoord: 59..171
IPR013805GrpE nucleotide exchange factor, coiled-coilGENE3D3.90.20.20coord: 17..134
e-value: 3.4E-6
score: 28.6
IPR013805GrpE nucleotide exchange factor, coiled-coilSUPERFAMILY58014Coiled-coil domain of nucleotide exchange factor GrpEcoord: 42..136
IPR009012GrpE nucleotide exchange factor, headGENE3D2.30.22.10coord: 136..180
e-value: 4.2E-5
score: 25.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19334contigH-elongata_contig19334:811..6089 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19334.5362.1mRNA_H-elongata_contig19334.5362.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19334 767..6171 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19334.5362.1 ID=prot_H-elongata_contig19334.5362.1|Name=mRNA_H-elongata_contig19334.5362.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
MGRGSSQKAKNGEVDDLLNSEAFLRKKVQMLEKQIKTTQEEIKVAEEEEQ
KAWGEWGPQIERLEKEFDLLKSRGGEARTKAFDKGKADAINQILVVADNL
ERASGVIKAETDGERAVVAHYNEAYTKMLGCLEDLGLKEVETIGAQFDYN
IHNAIMHEGTNEFEEDTVCKNQRFTTEDRLREHRNNSKDERVSKLLRAAV
GIRMDAQRLLPRIFGVRASLKEARKRGRDAQEKYWSDCGRGTFNLSYFGN
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000740GrpE
IPR013805GrpE_coiled_coil
IPR009012GrpE_head