prot_H-elongata_contig193215.5355.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig193215.5355.1
Unique Nameprot_H-elongata_contig193215.5355.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length72
Homology
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BLAST of mRNA_H-elongata_contig193215.5355.1 vs. uniprot
Match: D8LCK1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK1_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 9.790e-25
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 0 
Query:   11 QAALEDALDSTTLGDLWFERGELEEAKYEHQRALRIRTAKLRPGHPDIAESLESLGNVAIR 71
            + AL DALDST LGDLWFERGEL+EA+YEH RALRIR+A+L PGHPDIAESLESLGNVAIR
Sbjct:  120 KTALADALDSTILGDLWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIR 180
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BLAST of mRNA_H-elongata_contig193215.5355.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 8.660e-23
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 0 
Query:   11 QAALEDALDSTTLGDLWFERGELEEAKYEHQRALRIRTAKLRPGHPDIAESLESLGNVAIRE 72
            + AL DALDST  GD WFERGEL+EA+YEH RALRIR+A+L PGHPDIAESLESLGNVAIRE
Sbjct: 1565 KTALADALDSTIRGDQWFERGELKEARYEHLRALRIRSARLPPGHPDIAESLESLGNVAIRE 1626
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193215.5355.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCK1_ECTSI9.790e-2583.61Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5JQC7_9PHAE8.660e-2380.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 8..72
e-value: 2.9E-10
score: 41.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 20..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193215contigH-elongata_contig193215:418..633 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193215.5355.1mRNA_H-elongata_contig193215.5355.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig193215 418..633 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig193215.5355.1 ID=prot_H-elongata_contig193215.5355.1|Name=mRNA_H-elongata_contig193215.5355.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MPPSPTRLLEQAALEDALDSTTLGDLWFERGELEEAKYEHQRALRIRTAK
LRPGHPDIAESLESLGNVAIRE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf