prot_H-elongata_contig192842.5336.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig192842.5336.1
Unique Nameprot_H-elongata_contig192842.5336.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length122
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig192842.5336.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 86..122
e-value: 3.5E-5
score: 25.6
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 106..120
e-value: 2.4E-5
score: 24.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 107..120
score: 9.257
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 98..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig192842contigH-elongata_contig192842:722..1087 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig192842.5336.1mRNA_H-elongata_contig192842.5336.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig192842 704..1087 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig192842.5336.1 ID=prot_H-elongata_contig192842.5336.1|Name=mRNA_H-elongata_contig192842.5336.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MRPGEDPDEFLYKKDRCRDRLNSVTPKEGPLNRQFEDIILQRLPPEYDRI
RHTHFVREDINLADLRRMMSKIYADNLARSNFNATKGIAGRGVAMKATGR
DLSTIQCYHCNKLGHFKSECAD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf