prot_H-elongata_contig192534.5326.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig192534.5326.1
Unique Name	prot_H-elongata_contig192534.5326.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	121

Homology

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BLAST of mRNA_H-elongata_contig192534.5326.1 vs. uniprot
Match: A0A6H5KPT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.900e-17
Identity = 48/95 (50.53%), Postives = 66/95 (69.47%), Query Frame = 0

Query:   31 GTTEIGEISDLSQEDAT---PMWDKVQQSLGLGKWSYVGLGLALLMITLNNVLGLGWLGRAINPESE---LIDIESQRSPQMQVIRLDGPSNLLT 119
            G  E GE+   +QE A    P+W+KVQ +LGLG WSYVGLGLA+ +I LNNVLG+GW  + INPE E   +++++ Q+  Q+Q + LD  SNLL+
Sbjct:  195 GVEEEGEVGG-NQEAAVNQMPVWEKVQAALGLGVWSYVGLGLAVFIIVLNNVLGVGWATKIINPEYEPDSVLEVQ-QQGRQIQYMPLDDASNLLS 287

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BLAST of mRNA_H-elongata_contig192534.5326.1 vs. uniprot
Match: D8LM76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM76_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 4.540e-17
Identity = 41/75 (54.67%), Postives = 57/75 (76.00%), Query Frame = 0

Query:   48 PMWDKVQQSLGLGKWSYVGLGLALLMITLNNVLGLGWLGRAINPESE---LIDIESQRSPQMQVIRLDGPSNLLT 119
            P+W+KVQ +LGLG WSYVGLGLA+ +I LNNVLG+GW  + INPE E   +++++ Q+  Q+Q + LD  SNLL+
Sbjct:  143 PVWEKVQAALGLGVWSYVGLGLAVFIIVLNNVLGVGWATKIINPEYEPDSVLEVQ-QQGRQIQYMPLDDASNLLS 216

[Close]

BLAST of mRNA_H-elongata_contig192534.5326.1 vs. uniprot
Match: A0A835Z515_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z515_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.530e-8
Identity = 32/87 (36.78%), Postives = 50/87 (57.47%), Query Frame = 0

Query:   33 TEIGEISDLSQEDATPM-WDKVQQSLGLGKWSYVGLGLALLMITLNNVLGLGWLGRAINPESELIDIESQRSPQMQVIRLDGPSNLL 118
            T  G+  D+   D     W KV+++LGL   SY+GLGLA+++I  NN+LG GW GR    E + +  + + +    V+ L+ P N+L
Sbjct:  100 TRFGDDGDMQMPDGEATGWGKVEEALGLSTLSYLGLGLAVVIILFNNLLGPGWAGRLW--EGQELSPQPEMNLPYTVVPLNKPENIL 184

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig192534.5326.1 vs. uniprot

BLAST of mRNA_H-elongata_contig192534.5326.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A6H5KPT2_9PHAE	1.900e-17	50.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LM76_ECTSI	4.540e-17	54.67	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835Z515_9STRA	4.530e-8	36.78	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..61
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 62..85
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 86..120
None	No IPR available	TMHMM	TMhelix		coord: 64..86

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig192534	contig	H-elongata_contig192534:5..367 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig192534.5326.1	mRNA_H-elongata_contig192534.5326.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig192534 5..367 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig192534.5326.1 ID=prot_H-elongata_contig192534.5326.1|Name=mRNA_H-elongata_contig192534.5326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
KGLKKGVGVGTREGFAKEGKSSVSTQRSTLGTTEIGEISDLSQEDATPMW
DKVQQSLGLGKWSYVGLGLALLMITLNNVLGLGWLGRAINPESELIDIES
QRSPQMQVIRLDGPSNLLTP*